CB304976

Overview
NameCB304976
Unique NameCB304976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_LEIMA (60S ribosomal protein L11 OS=Leishmania major GN=RPL11 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.908e-32
Identity = 70/113 (61.95%), Postives = 80/113 (70.80%), Query Frame = -2
Query:  240 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVI 578
            IRRNEKIA + TVRG KA +LLE GLKVKE+EL   NF+ TG FGFGI EHIDLGIKYDPSTGIYGMDF+VVL                 G  H VTKE+AMKWF+  ++G+I
Sbjct:   61 IRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11B_YEAST (60S ribosomal protein L11-B OS=Saccharomyces cerevisiae GN=RPL11B PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.008e-31
Identity = 68/116 (58.62%), Postives = 81/116 (69.83%), Query Frame = -2
Query:  231 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 578
            IRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGI EHIDLGIKYDPS GI+GMDF+VV+                 G  H+ TKED + WF+ KY+  +L+K
Sbjct:   59 IRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 174          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11A_YEAST (60S ribosomal protein L11-A OS=Saccharomyces cerevisiae GN=RPL11A PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.008e-31
Identity = 68/116 (58.62%), Postives = 81/116 (69.83%), Query Frame = -2
Query:  231 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 578
            IRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGI EHIDLGIKYDPS GI+GMDF+VV+                 G  H+ TKED + WF+ KY+  +L+K
Sbjct:   59 IRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 174          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_CANGA (60S ribosomal protein L11 OS=Candida glabrata GN=RPL11 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.001e-31
Identity = 66/116 (56.90%), Postives = 82/116 (70.69%), Query Frame = -2
Query:  231 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 578
            IRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGIQEHIDLGIKYDPS GI+GMDF++V+                 G  H+ +KED + WF+ +Y+  +L+K
Sbjct:   59 IRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRNRNFSTTGNFGFGIQEHIDLGIKYDPSIGIFGMDFYIVMGRPGNRIARRKRCRATVGNSHKTSKEDTIAWFKQRYDADVLDK 174          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_ASHGO (60S ribosomal protein L11 OS=Ashbya gossypii GN=RPL11 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.114e-30
Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = -2
Query:  231 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 578
            IRRNEKIA +VT+RG K+ ++LE GLKVKEY+L  +NFS TG FGFGIQEHIDLGIKYDPS GIYGMDF+VV+                 G  H+ +KED + WF+ +Y+  +L+K
Sbjct:   59 IRRNEKIAVHVTIRGPKSEEILERGLKVKEYQLRTKNFSETGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMGRPGGRVSRRKRCRSTVGNSHKTSKEDTIAWFKQRYDADVLDK 174          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_NEUCR (60S ribosomal protein L11 OS=Neurospora crassa GN=rpl-11 PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.234e-30
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = -2
Query:  240 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVI 578
            IRRNEKI+ +VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGI EHIDLGIKYDP  GIYGMDF+  +                 G  HR+T++D +KWF+ +++ ++
Sbjct:   61 IRRNEKISVHVTVRGPKAEEILERGLKVKEYELRKRNFSETGNFGFGISEHIDLGIKYDPGIGIYGMDFYCCMTRPGERVSRRRRAKSRVGATHRITRDDTVKWFKSRFDAIV 173          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_TETTH (60S ribosomal protein L11 OS=Tetrahymena thermophila GN=RPL11 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.609e-29
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = -2
Query:  246 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEG 578
            I+RNEK+A +VT+RGDKA  +L  GLKVKE EL ++NFS TG FGFGIQEHIDLG+KYDPSTGI+GMDF+VVLE                G    ++KE+ + WF+ ++EG
Sbjct:   59 IKRNEKMAVHVTIRGDKARDILTRGLKVKEMELRKKNFSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRVARRRRATSRVGNNQMISKEECINWFKTEFEG 169          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_ENCCU (60S ribosomal protein L11 OS=Encephalitozoon cuniculi GN=RPL11 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.153e-27
Identity = 62/114 (54.39%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNEKIA +V V G KA +LL + L+VKEYEL    FS  GCFGFGI+EHIDLG+KYDP+ GI+GMDFFV+L                 G + RV  EDA KWF   +EGV++
Sbjct:   51 IRRNEKIAVHVNVSGKKAYELLNTALRVKEYELKESCFSNNGCFGFGIEEHIDLGLKYDPNIGIFGMDFFVILARPGDRVSKRKRCKSRVGNKQRVYAEDAKKWFVENFEGVLV 164          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_TOXCA (60S ribosomal protein L11 (Fragment) OS=Toxocara canis GN=RPL11 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.011e-17
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  408 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIK 578
            IRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFS TG FG G+QEHIDLGIK
Sbjct:   69 IRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGLGVQEHIDLGIK 125          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_ARCFU (50S ribosomal protein L5P OS=Archaeoglobus fulgidus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = -2
Query:  261 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 578
            IR+ E I   VT+RG+KA++ L+  L VKE  L R++  G G F FGI EHIDL G+ YDP  GI+GMD  V L+                   HRVTKED ++W +
Sbjct:   66 IRKGEAIGIKVTLRGEKALKFLKDALTVKENRLSRKSI-GEGYFAFGIAEHIDLPGVDYDPDVGIFGMDVCVSLKRRGYRVARRRRKKAKIATSHRVTKEDTIRWLE 171          
The following BLAST results are available for this feature:
BLAST of CB304976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL11_LEIMA5.908e-3261.9560S ribosomal protein L11 OS=Leishmania major GN=R... [more]
RL11B_YEAST1.008e-3158.6260S ribosomal protein L11-B OS=Saccharomyces cerev... [more]
RL11A_YEAST1.008e-3158.6260S ribosomal protein L11-A OS=Saccharomyces cerev... [more]
RL11_CANGA5.001e-3156.9060S ribosomal protein L11 OS=Candida glabrata GN=R... [more]
RL11_ASHGO1.114e-3056.0360S ribosomal protein L11 OS=Ashbya gossypii GN=RP... [more]
RL11_NEUCR4.234e-3054.8760S ribosomal protein L11 OS=Neurospora crassa GN=... [more]
RL11_TETTH1.609e-2955.8660S ribosomal protein L11 OS=Tetrahymena thermophi... [more]
RL11_ENCCU1.153e-2754.3960S ribosomal protein L11 OS=Encephalitozoon cunic... [more]
RL11_TOXCA7.011e-1773.6860S ribosomal protein L11 (Fragment) OS=Toxocara c... [more]
RL5_ARCFU1.196e-1643.9350S ribosomal protein L5P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304976 ID=CB304976; Name=CB304976; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTATCTGCGATTTTTAGTG
CAGCTAAGCCATAATCTTGATAATAAAATTTAAATAGACAAATAACAAAA
TATCTTGAACTACCAAAAGCATCTAACTCAGGTTTGCAAAACGCCAAGTA
ATAGCCAGTGTCTACAAACATCAACACTATAAATGCAAAATCGTCATCAC
ACAAAGGGCTTAAGCACCAATATTCTGGGACTTGTTGAGGATCACACCTT
CGTATTTGACCTGGAACCATTTCATTGCATCTTCCTTCGTGACACGGTGC
TGAATCCCAACACGAGACTTGCACCTACGGCGTCGACCTACACGATAACC
CGGGCGCTCCAGAACCACAAAGAAATCCATACCATAAATTCCAGTGGAAG
GATCATACTTGATTCCAAGATCAATATGCTCTTGAATACCAAAGCCAAAA
CAGCCAGTGCCACTGAAATTCCGACGCAGAAGCTCATATTCCTTCACCTT
CAATCCACTCTCCAAAAGCTGCATTGCCTTGTCACCTCTAACAGTCACAT
AGCATGCAATCTTCTCATTACGTCTGATC
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