CB304976
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15 Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 I++NE I C VT+RG +A Q LE+ L + + L+R F G FGI+EH D G+KYDP+ G++GMD VV++ HRVT ED++ + Y Sbjct: 55 IKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGVFGMDVTVVIKRPGERICKRRIATRKIPTNHRVTLEDSIAFLNDSY 164
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_PYRKO (50S ribosomal protein L5P OS=Pyrococcus kodakaraensis GN=rpl5p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15 Identity = 48/117 (41.03%), Postives = 67/117 (57.26%), Query Frame = -2 Query: 243 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKED----AMKWFQVKYEGV 578 IRR E IA VT+RG+KA Q+L+ L+ + +L NF G F FGIQEHI++ G++YDP GI+GMD V LE +H++TKE+ AM+ + K EG+ Sbjct: 67 IRRGEPIAVKVTLRGEKAYQMLDRLLEAVDRKLKASNFDEHGNFCFGIQEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVAKRKRQRRKIPTKHKLTKEEGIVFAMEELKAKVEGL 183
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METAC (50S ribosomal protein L5P OS=Methanosarcina acetivorans GN=rpl5p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15 Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 I++NE I C VT+RG KA + LE+ L + E L R F G FGI+EH D G++YDP+ G++GMD VVL+ HRVT +DA+ + Y Sbjct: 51 IKKNEPIGCKVTLRGQKAQEFLETALGIVEKTLNRSQFDSFGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIAARKIPAGHRVTVDDAIAFLNESY 160
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METMA (50S ribosomal protein L5P OS=Methanosarcina mazei GN=rpl5p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14 Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 I++NE I C VT+RG +A + L + ++ E L R F G FGI+EH D G++YDP+ G++GMD VVL+ HRVT +DA+ + Y Sbjct: 55 IKKNEPIGCKVTLRGQRAQEFLGTSFEIIEKTLSRAQFDSLGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIATRKIPTDHRVTVDDAIAFLNESY 164
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METBU (50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl5p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.616e-13 Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 I++ E I C VT+RG+ A LE+ L + E L F G FG++EH D G++YDP+ GI+GMD VV+ H++TKED + +F+ KY Sbjct: 55 IKKGEPIGCKVTLRGEAAEGFLETSLGIVEKRLNESQFDIFGNVSFGVEEHTDYPGMRYDPNIGIFGMDITVVVNRPGYRVSKRRIAKRKIPTSHKITKEDTISFFKDKY 164
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METLZ (50S ribosomal protein L5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl5p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13 Identity = 44/107 (41.12%), Postives = 54/107 (50.47%), Query Frame = -2 Query: 267 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYE--LLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKW 578 IR+ + I C T+RG KAM LE LK E L R F TG FGFGI+EH D G YDP GIYGMD V+E + V +E++MK+ Sbjct: 55 IRKGQPIGCKATLRGKKAMDFLEMALKTYAVENVLHTRQFDATGNFGFGIEEHTDFPGQAYDPKIGIYGMDIIAVIEKKGTRTARRKIQQKKINSKLHVAREESMKF 161
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_PYRHO (50S ribosomal protein L5P OS=Pyrococcus horikoshii GN=rpl5p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13 Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 IRR E IA VT+RG KA ++L+ L +Y+L +F G FGI+EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 70 IRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRARIPTRHKLTKEEGMLYMMEEF 179
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METST (50S ribosomal protein L5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl5p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12 Identity = 40/114 (35.09%), Postives = 59/114 (51.75%), Query Frame = -2 Query: 240 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVI 578 IR+ + IAC VT+RG+KA +++ L E + F G FGI+EHID+ G+KYDP GI+GMD V + RVTKE++M++ + + I Sbjct: 54 IRKKQPIACKVTLRGEKADKIISMVLSGLENRIKASQFDKEGNVSFGIREHIDIPGVKYDPDIGIFGMDVSVTFQKPGHRIKERRLRPKKLPQAQRVTKEESMEYMKENFNVTI 167
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12 Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 IR+ I+C VT+RG+ A + LE+ +K+ E ++ R F G F FGI+EH D G YDP GI+G+D VVL+ ++ VT EDA + + +Y Sbjct: 54 IRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTDYPGQSYDPKVGIFGLDVTVVLKRNGVRIARRHIQQKKLPLKQLVTVEDAKLFLKDRY 163
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_PYRFU (50S ribosomal protein L5P OS=Pyrococcus furiosus GN=rpl5p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12 Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 IRR E IA VT+RG KA +LL+ L + L +F G FGI+EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 70 IRRGEPIAVKVTLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179 The following BLAST results are available for this feature:
BLAST of CB304976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304976 ID=CB304976; Name=CB304976; organism=Citrus sinensis; type=EST; length=579bpback to top |