CB304976

Overview
NameCB304976
Unique NameCB304976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            I++NE I C VT+RG +A Q LE+ L + +  L+R  F   G   FGI+EH D  G+KYDP+ G++GMD  VV++                   HRVT ED++ +    Y
Sbjct:   55 IKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGVFGMDVTVVIKRPGERICKRRIATRKIPTNHRVTLEDSIAFLNDSY 164          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_PYRKO (50S ribosomal protein L5P OS=Pyrococcus kodakaraensis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 48/117 (41.03%), Postives = 67/117 (57.26%), Query Frame = -2
Query:  243 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKED----AMKWFQVKYEGV 578
            IRR E IA  VT+RG+KA Q+L+  L+  + +L   NF   G F FGIQEHI++ G++YDP  GI+GMD  V LE                  +H++TKE+    AM+  + K EG+
Sbjct:   67 IRRGEPIAVKVTLRGEKAYQMLDRLLEAVDRKLKASNFDEHGNFCFGIQEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVAKRKRQRRKIPTKHKLTKEEGIVFAMEELKAKVEGL 183          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METAC (50S ribosomal protein L5P OS=Methanosarcina acetivorans GN=rpl5p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            I++NE I C VT+RG KA + LE+ L + E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+                   HRVT +DA+ +    Y
Sbjct:   51 IKKNEPIGCKVTLRGQKAQEFLETALGIVEKTLNRSQFDSFGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIAARKIPAGHRVTVDDAIAFLNESY 160          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METMA (50S ribosomal protein L5P OS=Methanosarcina mazei GN=rpl5p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            I++NE I C VT+RG +A + L +  ++ E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+                   HRVT +DA+ +    Y
Sbjct:   55 IKKNEPIGCKVTLRGQRAQEFLGTSFEIIEKTLSRAQFDSLGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIATRKIPTDHRVTVDDAIAFLNESY 164          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METBU (50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.616e-13
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            I++ E I C VT+RG+ A   LE+ L + E  L    F   G   FG++EH D  G++YDP+ GI+GMD  VV+                    H++TKED + +F+ KY
Sbjct:   55 IKKGEPIGCKVTLRGEAAEGFLETSLGIVEKRLNESQFDIFGNVSFGVEEHTDYPGMRYDPNIGIFGMDITVVVNRPGYRVSKRRIAKRKIPTSHKITKEDTISFFKDKY 164          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METLZ (50S ribosomal protein L5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 44/107 (41.12%), Postives = 54/107 (50.47%), Query Frame = -2
Query:  267 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYE--LLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKW 578
            IR+ + I C  T+RG KAM  LE  LK    E  L  R F  TG FGFGI+EH D  G  YDP  GIYGMD   V+E                  +  V +E++MK+
Sbjct:   55 IRKGQPIGCKATLRGKKAMDFLEMALKTYAVENVLHTRQFDATGNFGFGIEEHTDFPGQAYDPKIGIYGMDIIAVIEKKGTRTARRKIQQKKINSKLHVAREESMKF 161          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_PYRHO (50S ribosomal protein L5P OS=Pyrococcus horikoshii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            IRR E IA  VT+RG KA ++L+  L   +Y+L   +F   G   FGI+EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   70 IRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRARIPTRHKLTKEEGMLYMMEEF 179          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METST (50S ribosomal protein L5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 40/114 (35.09%), Postives = 59/114 (51.75%), Query Frame = -2
Query:  240 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVI 578
            IR+ + IAC VT+RG+KA +++   L   E  +    F   G   FGI+EHID+ G+KYDP  GI+GMD  V  +                    RVTKE++M++ +  +   I
Sbjct:   54 IRKKQPIACKVTLRGEKADKIISMVLSGLENRIKASQFDKEGNVSFGIREHIDIPGVKYDPDIGIFGMDVSVTFQKPGHRIKERRLRPKKLPQAQRVTKEESMEYMKENFNVTI 167          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            IR+   I+C VT+RG+ A + LE+ +K+ E ++  R F   G F FGI+EH D  G  YDP  GI+G+D  VVL+                 ++  VT EDA  + + +Y
Sbjct:   54 IRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTDYPGQSYDPKVGIFGLDVTVVLKRNGVRIARRHIQQKKLPLKQLVTVEDAKLFLKDRY 163          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_PYRFU (50S ribosomal protein L5P OS=Pyrococcus furiosus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            IRR E IA  VT+RG KA +LL+  L   +  L   +F   G   FGI+EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   70 IRRGEPIAVKVTLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179          
The following BLAST results are available for this feature:
BLAST of CB304976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL5_METBF2.256e-1538.1850S ribosomal protein L5P OS=Methanosarcina barker... [more]
RL5_PYRKO5.025e-1541.0350S ribosomal protein L5P OS=Pyrococcus kodakaraen... [more]
RL5_METAC6.563e-1539.0950S ribosomal protein L5P OS=Methanosarcina acetiv... [more]
RL5_METMA5.556e-1436.3650S ribosomal protein L5P OS=Methanosarcina mazei ... [more]
RL5_METBU1.616e-1336.3650S ribosomal protein L5P OS=Methanococcoides burt... [more]
RL5_METLZ2.757e-1341.1250S ribosomal protein L5P OS=Methanocorpusculum la... [more]
RL5_PYRHO4.703e-1337.2750S ribosomal protein L5P OS=Pyrococcus horikoshii... [more]
RL5_METST2.334e-1235.0950S ribosomal protein L5P OS=Methanosphaera stadtm... [more]
RL5_METHJ2.334e-1236.3650S ribosomal protein L5P OS=Methanospirillum hung... [more]
RL5_PYRFU3.981e-1237.2750S ribosomal protein L5P OS=Pyrococcus furiosus G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304976 ID=CB304976; Name=CB304976; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTATCTGCGATTTTTAGTG
CAGCTAAGCCATAATCTTGATAATAAAATTTAAATAGACAAATAACAAAA
TATCTTGAACTACCAAAAGCATCTAACTCAGGTTTGCAAAACGCCAAGTA
ATAGCCAGTGTCTACAAACATCAACACTATAAATGCAAAATCGTCATCAC
ACAAAGGGCTTAAGCACCAATATTCTGGGACTTGTTGAGGATCACACCTT
CGTATTTGACCTGGAACCATTTCATTGCATCTTCCTTCGTGACACGGTGC
TGAATCCCAACACGAGACTTGCACCTACGGCGTCGACCTACACGATAACC
CGGGCGCTCCAGAACCACAAAGAAATCCATACCATAAATTCCAGTGGAAG
GATCATACTTGATTCCAAGATCAATATGCTCTTGAATACCAAAGCCAAAA
CAGCCAGTGCCACTGAAATTCCGACGCAGAAGCTCATATTCCTTCACCTT
CAATCCACTCTCCAAAAGCTGCATTGCCTTGTCACCTCTAACAGTCACAT
AGCATGCAATCTTCTCATTACGTCTGATC
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