CB304976

Overview
NameCB304976
Unique NameCB304976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:259..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METB6 (50S ribosomal protein L5P OS=Methanoregula boonei (strain 6A8) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            IR+   I C VT+RG  A   +++ L +    +    F  +G F FGI+EH D  G+ YDP  GI+GMD  VVLE                  + RV KEDA+ + + +Y
Sbjct:   51 IRKGAPIGCKVTLRGKPAEDFIKTSLNIVNKTIFESQFDKSGNFSFGIEEHTDFPGMSYDPQIGIFGMDINVVLERNGIRITRRRMQKKKLPEKQRVKKEDAIAFLKKEY 160          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METS3 (50S ribosomal protein L5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.791e-12
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = -2
Query:  261 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 578
            IR+ + IAC +T+RG+KA + +E  L+     +    F   G   FGI+EHID+ G+KY+P  GI+GM+  V  E                  +HR++KE+ MK+ +
Sbjct:   54 IRKRQPIACKLTLRGEKADKAIEMVLEGINKNIKPTQFDAQGNLSFGIKEHIDIPGMKYNPDIGIFGMNVSVTFEKPGYRIAKRRIQQKKVPAKHRISKEETMKYME 160          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_SULSO (50S ribosomal protein L5P OS=Sulfolobus solfataricus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = -2
Query:  261 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 578
            IR+ ++I   VT+RG +A + L   L+   Y L + +F   G   FGI EH+ L G +YDP  GI+GMD  + LE                  +HRVTKE+AM++ +
Sbjct:   66 IRKGQEIGVKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRISRRRRKKAKIPKRHRVTKEEAMEFLR 172          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_PYRAB (50S ribosomal protein L5P OS=Pyrococcus abyssi GN=rpl5p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            IRR E IA  VT+RG KA ++L+  L   +  L   +F   G   FGI EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   70 IRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = -2
Query:  231 IRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 578
            IR+   I   VT+RG KA + L++     K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   62 IRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGYRVKSRKVKRSHIPEKHLVTKDEAIEYIQAKFDTEVVRE 181          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11
Identity = 47/126 (37.30%), Postives = 64/126 (50.79%), Query Frame = -2
Query:  225 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAM----KWFQVKYEGVILNKSQ 578
            IR+   I   VT+RG KA + L++  +  + E   L   +F   G F FGI EHID  G KYDP  GI+GMD  V LE                  +HR+T+E+A+    K F VK E V+L + +
Sbjct:   62 IRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRAKIPRRHRLTREEAIEFIEKTFGVKVERVLLEEEE 187          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = -2
Query:  249 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 578
            IR+ + IAC VT+RG++A ++L+  L+     L    F   G    GI EHID+ G+KYDP  GI+GM+  V  E                  +HRV++E+A+++ + K++
Sbjct:   54 IRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQ 164          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METMJ (50S ribosomal protein L5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            IR+   I C VT+R + A + + + L + E  L    F  TG   FGI+EH D  G+ YDP+ GIYGMD  VVLE                    +V KE+A+ +    Y
Sbjct:   54 IRKGAPIGCKVTLRRENAEKFITTALDIIERRLAPSQFDRTGNVSFGIEEHTDFPGMSYDPTIGIYGMDVNVVLEYKGARIARRSVERRKLPADQKVNKEEAIAFMCENY 163          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METVS (50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 41/113 (36.28%), Postives = 55/113 (48.67%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            IR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GIYGMD  V  E                  +H V KE+A+++ + K+
Sbjct:   62 IRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METVA (50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 41/113 (36.28%), Postives = 55/113 (48.67%), Query Frame = -2
Query:  252 IRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578
            IR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GIYGMD  V  E                  +H V KE+A+++ + K+
Sbjct:   62 IRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174          
The following BLAST results are available for this feature:
BLAST of CB304976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL5_METB63.981e-1235.4550S ribosomal protein L5P OS=Methanoregula boonei ... [more]
RL5_METS36.791e-1234.5850S ribosomal protein L5P OS=Methanobrevibacter sm... [more]
RL5_SULSO1.158e-1136.4550S ribosomal protein L5P OS=Sulfolobus solfataric... [more]
RL5_PYRAB1.158e-1136.3650S ribosomal protein L5P OS=Pyrococcus abyssi GN=... [more]
RL5_METMP1.158e-1135.0050S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METJA1.976e-1137.3050S ribosomal protein L5P OS=Methanocaldococcus ja... [more]
RL5_METTH2.581e-1134.2350S ribosomal protein L5P OS=Methanobacterium ther... [more]
RL5_METMJ7.508e-1135.4550S ribosomal protein L5P OS=Methanoculleus marisn... [more]
RL5_METVS9.806e-1136.2850S ribosomal protein L5P OS=Methanococcus vanniel... [more]
RL5_METVA9.806e-1136.2850S ribosomal protein L5P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304976 ID=CB304976; Name=CB304976; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTATCTGCGATTTTTAGTG
CAGCTAAGCCATAATCTTGATAATAAAATTTAAATAGACAAATAACAAAA
TATCTTGAACTACCAAAAGCATCTAACTCAGGTTTGCAAAACGCCAAGTA
ATAGCCAGTGTCTACAAACATCAACACTATAAATGCAAAATCGTCATCAC
ACAAAGGGCTTAAGCACCAATATTCTGGGACTTGTTGAGGATCACACCTT
CGTATTTGACCTGGAACCATTTCATTGCATCTTCCTTCGTGACACGGTGC
TGAATCCCAACACGAGACTTGCACCTACGGCGTCGACCTACACGATAACC
CGGGCGCTCCAGAACCACAAAGAAATCCATACCATAAATTCCAGTGGAAG
GATCATACTTGATTCCAAGATCAATATGCTCTTGAATACCAAAGCCAAAA
CAGCCAGTGCCACTGAAATTCCGACGCAGAAGCTCATATTCCTTCACCTT
CAATCCACTCTCCAAAAGCTGCATTGCCTTGTCACCTCTAACAGTCACAT
AGCATGCAATCTTCTCATTACGTCTGATC
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