CB304976
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METB6 (50S ribosomal protein L5P OS=Methanoregula boonei (strain 6A8) GN=rpl5p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12 Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 IR+ I C VT+RG A +++ L + + F +G F FGI+EH D G+ YDP GI+GMD VVLE + RV KEDA+ + + +Y Sbjct: 51 IRKGAPIGCKVTLRGKPAEDFIKTSLNIVNKTIFESQFDKSGNFSFGIEEHTDFPGMSYDPQIGIFGMDINVVLERNGIRITRRRMQKKKLPEKQRVKKEDAIAFLKKEY 160
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METS3 (50S ribosomal protein L5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl5p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.791e-12 Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = -2 Query: 261 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 578 IR+ + IAC +T+RG+KA + +E L+ + F G FGI+EHID+ G+KY+P GI+GM+ V E +HR++KE+ MK+ + Sbjct: 54 IRKRQPIACKLTLRGEKADKAIEMVLEGINKNIKPTQFDAQGNLSFGIKEHIDIPGMKYNPDIGIFGMNVSVTFEKPGYRIAKRRIQQKKVPAKHRISKEETMKYME 160
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_SULSO (50S ribosomal protein L5P OS=Sulfolobus solfataricus GN=rpl5p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11 Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = -2 Query: 261 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 578 IR+ ++I VT+RG +A + L L+ Y L + +F G FGI EH+ L G +YDP GI+GMD + LE +HRVTKE+AM++ + Sbjct: 66 IRKGQEIGVKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRISRRRRKKAKIPKRHRVTKEEAMEFLR 172
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_PYRAB (50S ribosomal protein L5P OS=Pyrococcus abyssi GN=rpl5p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11 Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 IRR E IA VT+RG KA ++L+ L + L +F G FGI EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 70 IRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11 Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = -2 Query: 231 IRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 578 IR+ I VT+RG KA + L++ K L +F G F FG+ EHID G KYDPS GIYGMD V E +H VTK++A+++ Q K++ ++ + Sbjct: 62 IRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGYRVKSRKVKRSHIPEKHLVTKDEAIEYIQAKFDTEVVRE 181
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11 Identity = 47/126 (37.30%), Postives = 64/126 (50.79%), Query Frame = -2 Query: 225 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAM----KWFQVKYEGVILNKSQ 578 IR+ I VT+RG KA + L++ + + E L +F G F FGI EHID G KYDP GI+GMD V LE +HR+T+E+A+ K F VK E V+L + + Sbjct: 62 IRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRAKIPRRHRLTREEAIEFIEKTFGVKVERVLLEEEE 187
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11 Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = -2 Query: 249 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYE 578 IR+ + IAC VT+RG++A ++L+ L+ L F G GI EHID+ G+KYDP GI+GM+ V E +HRV++E+A+++ + K++ Sbjct: 54 IRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQ 164
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METMJ (50S ribosomal protein L5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11 Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 IR+ I C VT+R + A + + + L + E L F TG FGI+EH D G+ YDP+ GIYGMD VVLE +V KE+A+ + Y Sbjct: 54 IRKGAPIGCKVTLRRENAEKFITTALDIIERRLAPSQFDRTGNVSFGIEEHTDFPGMSYDPTIGIYGMDVNVVLEYKGARIARRSVERRKLPADQKVNKEEAIAFMCENY 163
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METVS (50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11 Identity = 41/113 (36.28%), Postives = 55/113 (48.67%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 IR+ I VT+RG A + LE+ KV L +F G F FG+ EHID G KYDP+ GIYGMD V E +H V KE+A+++ + K+ Sbjct: 62 IRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METVA (50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11 Identity = 41/113 (36.28%), Postives = 55/113 (48.67%), Query Frame = -2 Query: 252 IRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 578 IR+ I VT+RG A + LE+ KV L +F G F FG+ EHID G KYDP+ GIYGMD V E +H V KE+A+++ + K+ Sbjct: 62 IRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174 The following BLAST results are available for this feature:
BLAST of CB304976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304976 ID=CB304976; Name=CB304976; organism=Citrus sinensis; type=EST; length=579bpback to top |