CB304976

Overview
NameCB304976
Unique NameCB304976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL5_METM7 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 42/120 (35.00%), Postives = 58/120 (48.33%), Query Frame = -2 
Query:  231 IRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSGTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 578
            IR+   I   VT+RG  A + L    S  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   62 IRKKLPIGLKVTLRGKNAEEFLGNAFSAFKTCGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDICVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQAKFDTEVVRE 181
The following BLAST results are available for this feature:
BLAST of CB304976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL5_METM79.806e-1135.0050S ribosomal protein L5P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304976 ID=CB304976; Name=CB304976; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTATCTGCGATTTTTAGTG
CAGCTAAGCCATAATCTTGATAATAAAATTTAAATAGACAAATAACAAAA
TATCTTGAACTACCAAAAGCATCTAACTCAGGTTTGCAAAACGCCAAGTA
ATAGCCAGTGTCTACAAACATCAACACTATAAATGCAAAATCGTCATCAC
ACAAAGGGCTTAAGCACCAATATTCTGGGACTTGTTGAGGATCACACCTT
CGTATTTGACCTGGAACCATTTCATTGCATCTTCCTTCGTGACACGGTGC
TGAATCCCAACACGAGACTTGCACCTACGGCGTCGACCTACACGATAACC
CGGGCGCTCCAGAACCACAAAGAAATCCATACCATAAATTCCAGTGGAAG
GATCATACTTGATTCCAAGATCAATATGCTCTTGAATACCAAAGCCAAAA
CAGCCAGTGCCACTGAAATTCCGACGCAGAAGCTCATATTCCTTCACCTT
CAATCCACTCTCCAAAAGCTGCATTGCCTTGTCACCTCTAACAGTCACAT
AGCATGCAATCTTCTCATTACGTCTGATC
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