CB304985

Overview
NameCB304985
Unique NameCB304985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1083..1767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_COSCS (Actin (Fragment) OS=Costaria costata PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  275 ALAPSTMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 331
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  321 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT6_SOLTU (Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  321 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  321 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  321 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  321 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT2_ABSGL (Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  321 ALAPSSMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 377
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  321 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  321 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  321 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of CB304985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
ACT_COSCS1.680e-2494.74Actin (Fragment) OS=Costaria costata PE=3 SV=2[more]
ACT_COLSC1.680e-2494.74Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT6_SOLTU1.680e-2494.74Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2[more]
ACT4_ARATH1.680e-2494.74Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT3_SOLTU1.680e-2494.74Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]
ACT3_PEA1.680e-2494.74Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT2_ABSGL1.680e-2494.74Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1[more]
ACT1_TOBAC1.680e-2494.74Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT1_ORYSJ1.680e-2494.74Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI1.680e-2494.74Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304985 ID=CB304985; Name=CB304985; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCATTGAAAGCTCTCAA
ACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCAAGCTGACA
CTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCTTTTG
AGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGAAATA
GAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTACTTAA
AATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGA
ATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACG
CTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAA
TGGCCCAATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAA
CGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGC
ACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTC
ATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATG
CAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGGGGAGCC
ACGACCTTGATCTTCATGCTGCTTNGAGCAAGTGC
back to top