CB304985 | Citrus Genome Database

Overview


Name	CB304985
Unique Name	CB304985
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	685

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_CANDC (Actin OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = -1

Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVH KCF
Sbjct:  320 ALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHHKCF 376

[Close]

BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_CANAL (Actin OS=Candida albicans GN=ACT1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = -1

Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA SSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVH KCF
Sbjct:  320 ALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHHKCF 376

[Close]

BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTS_ORYLA (Actin, alpha skeletal muscle OS=Oryzias latipes GN=acta1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1

Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  321 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

[Close]

BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTS_OREMO (Actin, alpha skeletal muscle OS=Oreochromis mossambicus GN=acta1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1

Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  321 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

[Close]

BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTSB_TAKRU (Actin, alpha skeletal muscle B OS=Takifugu rubripes GN=acta1b PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1

Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  321 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

[Close]

BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTSA_TAKRU (Actin, alpha skeletal muscle A OS=Takifugu rubripes GN=acta1a PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1

Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  321 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377

[Close]

BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTN_STYCL (Actin, muscle OS=Styela clava GN=TB12 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1

Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  322 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 378

[Close]

BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTM_STYCL (Actin, muscle OS=Styela clava PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1

Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  322 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 378

[Close]

BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTM_APLCA (Actin, muscle OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1

Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            +LA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  320 SLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

[Close]

BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTH_RAT (Actin, gamma-enteric smooth muscle OS=Rattus norvegicus GN=Actg2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -1

Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF 376

The following BLAST results are available for this feature:

BLAST of CB304985 vs. ExPASy Swiss-Prot

BLAST of CB304985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371


Match Name	E-value	Identity	Description
ACT_CANDC	1.089e-23	89.47	Actin OS=Candida dubliniensis (strain CD36 / CBS 7...	[more]
ACT_CANAL	1.089e-23	89.47	Actin OS=Candida albicans GN=ACT1 PE=3 SV=1	[more]
ACTS_ORYLA	1.089e-23	89.47	Actin, alpha skeletal muscle OS=Oryzias latipes GN...	[more]
ACTS_OREMO	1.089e-23	89.47	Actin, alpha skeletal muscle OS=Oreochromis mossam...	[more]
ACTSB_TAKRU	1.089e-23	89.47	Actin, alpha skeletal muscle B OS=Takifugu rubripe...	[more]
ACTSA_TAKRU	1.089e-23	89.47	Actin, alpha skeletal muscle A OS=Takifugu rubripe...	[more]
ACTN_STYCL	1.089e-23	89.47	Actin, muscle OS=Styela clava GN=TB12 PE=2 SV=1	[more]
ACTM_STYCL	1.089e-23	89.47	Actin, muscle OS=Styela clava PE=2 SV=1	[more]
ACTM_APLCA	1.089e-23	89.47	Actin, muscle OS=Aplysia californica PE=2 SV=1	[more]
ACTH_RAT	1.089e-23	89.47	Actin, gamma-enteric smooth muscle OS=Rattus norve...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0003_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B09 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304985 ID=CB304985; Name=CB304985; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCATTGAAAGCTCTCAA
ACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCAAGCTGACA
CTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCTTTTG
AGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGAAATA
GAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTACTTAA
AATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGA
ATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACG
CTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAA
TGGCCCAATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAA
CGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGC
ACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTC
ATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATG
CAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGGGGAGCC
ACGACCTTGATCTTCATGCTGCTTNGAGCAAGTGC