CB304985

Overview
NameCB304985
Unique NameCB304985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_TRIRE (Actin OS=Trichoderma reesei GN=act PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = -1
Query:  515 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 673
            S+MK+K++APPERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIVH KCF
Sbjct:  324 SAMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_PROCL (Actin (Fragment) OS=Procambarus clarkii PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = -1
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA +++KIK++APPERKYSVWIGGSILASLSTFQ MWI+K EYDESGP IVHRKCF
Sbjct:  266 ALAPATIKIKIIAPPERKYSVWIGGSILASLSTFQTMWITKEEYDESGPGIVHRKCF 322          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_ACECL (Actin (Fragment) OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA SSMKIKVVA PERK+SVWIGGSIL+SLSTFQQMWISK EYDE+GP+IVHRKCF
Sbjct:  298 LAPSSMKIKVVASPERKFSVWIGGSILSSLSTFQQMWISKEEYDEAGPAIVHRKCF 353          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT2_SUIBO (Actin-2 OS=Suillus bovinus GN=ACT2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            +L+ SSMK+K+VAPPERKYSVWIGGSILASLSTFQ +W SK EYDESGP IVHRKCF
Sbjct:  319 SLSPSSMKVKIVAPPERKYSVWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT2_PHYIN (Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA ++MK+K++ PPERKYSVWIGGSILASL+TFQ MWISK EYDESGPSIVHRKCF
Sbjct:  320 LAPTAMKVKIITPPERKYSVWIGGSILASLATFQHMWISKTEYDESGPSIVHRKCF 375          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT1_SUIBO (Actin-1 OS=Suillus bovinus GN=ACT1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            +L+ SSMK+K+VAPPERKYSVWIGGSILASLSTFQ +W SK EYDESGP IVHRKCF
Sbjct:  319 SLSPSSMKVKIVAPPERKYSVWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_CYAME (Actin OS=Cyanidioschyzon merolae PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = -1
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ++A SS+KIK+VAP ERKYSVWIGGSILASLSTFQQMWISK EYDE GPS+VHRKCF
Sbjct:  321 SVAPSSVKIKLVAPAERKYSVWIGGSILASLSTFQQMWISKAEYDEFGPSVVHRKCF 377          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_PHYME (Actin OS=Phytophthora megasperma PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 45/56 (80.36%), Postives = 52/56 (92.86%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA ++MK+K++ PPERKYSVWIGGSILASL+TFQ MWISK +YDESGPSIVHRKCF
Sbjct:  320 LAPTAMKVKIITPPERKYSVWIGGSILASLATFQHMWISKTDYDESGPSIVHRKCF 375          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTX_TAKRU (Actin, alpha anomalous OS=Takifugu rubripes PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = -1
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKI+++APPERKYSVWIGGSILASLSTFQQMWISK EY+E GPSI+H KCF
Sbjct:  320 ALAPSTMKIQIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYEEIGPSIIHCKCF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTM_BRAFL (Actin, muscle OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = -1
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYS WIGGSILASLSTF  MWI K EYDE+GP+IVHRKCF
Sbjct:  322 ALAPSTMKIKIIAPPERKYSCWIGGSILASLSTFASMWIKKSEYDEAGPAIVHRKCF 378          
The following BLAST results are available for this feature:
BLAST of CB304985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
ACT_TRIRE1.019e-2186.79Actin OS=Trichoderma reesei GN=act PE=3 SV=1[more]
ACT_PROCL1.019e-2182.46Actin (Fragment) OS=Procambarus clarkii PE=1 SV=1[more]
ACT_ACECL1.019e-2187.50Actin (Fragment) OS=Acetabularia cliftonii PE=3 SV... [more]
ACT2_SUIBO1.019e-2182.46Actin-2 OS=Suillus bovinus GN=ACT2 PE=2 SV=1[more]
ACT2_PHYIN1.019e-2182.14Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=... [more]
ACT1_SUIBO1.019e-2182.46Actin-1 OS=Suillus bovinus GN=ACT1 PE=2 SV=1[more]
ACT_CYAME1.331e-2184.21Actin OS=Cyanidioschyzon merolae PE=3 SV=1[more]
ACT_PHYME2.271e-2180.36Actin OS=Phytophthora megasperma PE=3 SV=1[more]
ACTX_TAKRU2.271e-2182.46Actin, alpha anomalous OS=Takifugu rubripes PE=2 S... [more]
ACTM_BRAFL2.965e-2180.70Actin, muscle OS=Branchiostoma floridae PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304985 ID=CB304985; Name=CB304985; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCATTGAAAGCTCTCAA
ACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCAAGCTGACA
CTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCTTTTG
AGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGAAATA
GAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTACTTAA
AATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGA
ATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACG
CTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAA
TGGCCCAATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAA
CGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGC
ACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTC
ATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATG
CAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGGGGAGCC
ACGACCTTGATCTTCATGCTGCTTNGAGCAAGTGC
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