CB304985

Overview
NameCB304985
Unique NameCB304985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTY_DICDI (Centractin OS=Dictyostelium discoideum GN=arpA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA   +KIK+ APPERKYS W+GGSILASLSTF+ +W+++ EY+E G S++HRK F
Sbjct:  328 LAPKDIKIKITAPPERKYSAWMGGSILASLSTFKDLWVTRQEYEEDGCSVIHRKIF 383          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ARPM1_MOUSE (Actin-related protein M1 homolog OS=Mus musculus GN=Arpm1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA ++  ++V+APPERK SVW+GGSILASLS FQ MWI+  E++E GP+IVH++CF
Sbjct:  314 LAPANTAVQVIAPPERKISVWMGGSILASLSAFQDMWITAAEFEEVGPNIVHQRCF 369          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ARPM1_HUMAN (Actin-related protein M1 OS=Homo sapiens GN=ARPM1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            +A ++  ++V+APPERK SVW+GGSILASLS FQ MWI+  E+ E GP+IVH++CF
Sbjct:  317 VAPANTAVQVIAPPERKISVWMGGSILASLSAFQDMWITAAEFKEVGPNIVHQRCF 372          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTZ_PNECA (Actin-2 OS=Pneumocystis carinii PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = -1
Query:  521 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 682
            LA   +KIK+ APPERKYS WIGGSILASLSTF++MW+S  EY E  P I+HRK
Sbjct:  331 LAVKDVKIKIFAPPERKYSTWIGGSILASLSTFRKMWVSAEEYQED-PDIIHRK 383          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_EUPCR (Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = -1
Query:  518 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 682
            LA  +MK+KV+A P+RKY+VW GGS LA LSTF  MW++K +Y E G SIVHRKC
Sbjct:  324 LAPQTMKVKVIASPDRKYAVWRGGSTLAKLSTFAGMWVTKEDYAEFGESIVHRKC 378          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTY_MOUSE (Beta-centractin OS=Mus musculus GN=Actr1b PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA   +KIK+ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  321 LAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTY_HUMAN (Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA   +KIK+ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  321 LAPKDIKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTY_BOVIN (Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA   +KIK+ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  321 LAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT2_OXYNO (Actin, cytoplasmic OS=Oxytricha nova GN=MIC-ACT-1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = -1
Query:  518 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 685
            A A  S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  319 ARAPKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 374          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT1_OXYNO (Actin, cytoplasmic OS=Oxytricha nova PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = -1
Query:  518 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 685
            A A  S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  319 ARAPKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 374          
The following BLAST results are available for this feature:
BLAST of CB304985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
ACTY_DICDI1.091e-1562.50Centractin OS=Dictyostelium discoideum GN=arpA PE=... [more]
ARPM1_MOUSE2.432e-1562.50Actin-related protein M1 homolog OS=Mus musculus G... [more]
ARPM1_HUMAN1.207e-1460.71Actin-related protein M1 OS=Homo sapiens GN=ARPM1 ... [more]
ACTZ_PNECA2.688e-1468.52Actin-2 OS=Pneumocystis carinii PE=2 SV=1[more]
ACT_EUPCR4.586e-1463.64Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1[more]
ACTY_MOUSE5.989e-1462.50Beta-centractin OS=Mus musculus GN=Actr1b PE=1 SV=... [more]
ACTY_HUMAN5.989e-1462.50Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=... [more]
ACTY_BOVIN5.989e-1462.50Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1[more]
ACT2_OXYNO5.989e-1460.71Actin, cytoplasmic OS=Oxytricha nova GN=MIC-ACT-1 ... [more]
ACT1_OXYNO5.989e-1460.71Actin, cytoplasmic OS=Oxytricha nova PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304985 ID=CB304985; Name=CB304985; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCATTGAAAGCTCTCAA
ACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCAAGCTGACA
CTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCTTTTG
AGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGAAATA
GAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTACTTAA
AATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGA
ATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACG
CTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAA
TGGCCCAATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAA
CGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGC
ACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTC
ATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATG
CAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGGGGAGCC
ACGACCTTGATCTTCATGCTGCTTNGAGCAAGTGC
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