CB304985

Overview
NameCB304985
Unique NameCB304985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTY_DROME (Actin-like protein 53D OS=Drosophila melanogaster GN=Arp53D PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            +A  S++IKV A P+R++SVW GGS+LASL++FQ MWI   EY+E G +IVHRKCF
Sbjct:  321 MAPPSIRIKVNASPDRRFSVWTGGSVLASLTSFQNMWIDSLEYEEVGSAIVHRKCF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT26_DICDI (Putative actin-26 OS=Dictyostelium discoideum GN=act26 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = -1
Query:  521 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 682
            LA ++MKI +VA PERK  VWIGGSIL +L  FQ+MWISK EYDE GPSI+++K
Sbjct:  318 LAPNNMKILIVASPERKNLVWIGGSILTTLPLFQEMWISKEEYDEHGPSIINKK 371          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_HISCA (Actin OS=Histriculus cavicola PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = -1
Query:  518 AXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 679
            A  S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  321 APKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 374          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT2_OXYFA (Actin, cytoplasmic OS=Oxytricha fallax PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = -1
Query:  518 AXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 679
            A  S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  303 APKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 356          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT1_OXYTR (Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = -1
Query:  518 AXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 679
            A  S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  321 APKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 374          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT1_OXYFA (Actin, macronuclear OS=Oxytricha fallax PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = -1
Query:  518 AXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 679
            A  S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  303 APKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 356          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTZ_RAT (Alpha-centractin OS=Rattus norvegicus GN=Actr1a PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA   +KI++ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  321 LAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTZ_MOUSE (Alpha-centractin OS=Mus musculus GN=Actr1a PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA   +KI++ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  321 LAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTZ_MACFA (Alpha-centractin OS=Macaca fascicularis GN=ACTR1A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA   +KI++ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  321 LAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTZ_HUMAN (Alpha-centractin OS=Homo sapiens GN=ACTR1A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA   +KI++ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  321 LAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF 376          
The following BLAST results are available for this feature:
BLAST of CB304985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
ACTY_DROME7.822e-1460.71Actin-like protein 53D OS=Drosophila melanogaster ... [more]
ACT26_DICDI7.822e-1466.67Putative actin-26 OS=Dictyostelium discoideum GN=a... [more]
ACT_HISCA1.022e-1361.11Actin OS=Histriculus cavicola PE=3 SV=2[more]
ACT2_OXYFA1.022e-1361.11Actin, cytoplasmic OS=Oxytricha fallax PE=3 SV=1[more]
ACT1_OXYTR1.022e-1361.11Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=... [more]
ACT1_OXYFA1.022e-1361.11Actin, macronuclear OS=Oxytricha fallax PE=3 SV=1[more]
ACTZ_RAT1.743e-1360.71Alpha-centractin OS=Rattus norvegicus GN=Actr1a PE... [more]
ACTZ_MOUSE1.743e-1360.71Alpha-centractin OS=Mus musculus GN=Actr1a PE=2 SV... [more]
ACTZ_MACFA1.743e-1360.71Alpha-centractin OS=Macaca fascicularis GN=ACTR1A ... [more]
ACTZ_HUMAN1.743e-1360.71Alpha-centractin OS=Homo sapiens GN=ACTR1A PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304985 ID=CB304985; Name=CB304985; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCATTGAAAGCTCTCAA
ACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCAAGCTGACA
CTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCTTTTG
AGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGAAATA
GAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTACTTAA
AATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGA
ATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACG
CTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAA
TGGCCCAATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAA
CGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGC
ACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTC
ATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATG
CAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGGGGAGCC
ACGACCTTGATCTTCATGCTGCTTNGAGCAAGTGC
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