CB304985

Overview
NameCB304985
Unique NameCB304985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTZ_CANFA (Alpha-centractin OS=Canis familiaris GN=ACTR1A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA   +KI++ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  321 LAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTZ_DROME (Actin-like protein 87C OS=Drosophila melanogaster GN=Arp87C PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = -1
Query:  515 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 667
            +KI++ AP ER YS W+GGSILASL TF++MWISK EY+E G   VHRK F
Sbjct:  326 LKIRIAAPQERLYSTWMGGSILASLDTFKKMWISKREYEEEGQKAVHRKTF 376          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_CALFI (Actin (Fragment) OS=Calanus finmarchicus PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = -1
Query:  572 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMW 685
            ALA S++KIK++APPERKYSVWIGGSILASLSTFQQMW
Sbjct:  241 ALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMW 278          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTZ_NEUCR (Actin-like protein OS=Neurospora crassa GN=ro-4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = -1
Query:  521 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 682
            LA   M+IK+ APPERKYS WIGGSILA LSTF++MW+S  ++ E+ P I+H K
Sbjct:  326 LAVKDMRIKIFAPPERKYSTWIGGSILAGLSTFRKMWVSIDDWHEN-PDIIHTK 378          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = -1
Query:  518 SMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 670
            SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  372 SMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = -1
Query:  518 SMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 670
            SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  372 SMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = -1
Query:  518 SMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 670
            SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  372 SMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACL6B_BOVIN (Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = -1
Query:  518 SMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 670
            SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  372 SMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_GIALA (Actin OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = -1
Query:  518 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 682
            L  +  ++++ +P +RKYS W+GGS+L SL+TF+ MW+S  EY E+G SI +RKC
Sbjct:  320 LIPAGKRVRISSPEDRKYSAWVGGSVLGSLATFESMWVSSQEYQENGASIANRKC 374          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = -1
Query:  518 SMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 670
            SM++K++A     ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  375 SMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
The following BLAST results are available for this feature:
BLAST of CB304985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
ACTZ_CANFA1.743e-1360.71Alpha-centractin OS=Canis familiaris GN=ACTR1A PE=... [more]
ACTZ_DROME3.882e-1364.71Actin-like protein 87C OS=Drosophila melanogaster ... [more]
ACT_CALFI1.927e-1286.84Actin (Fragment) OS=Calanus finmarchicus PE=2 SV=1[more]
ACTZ_NEUCR3.286e-1261.11Actin-like protein OS=Neurospora crassa GN=ro-4 PE... [more]
ACL6B_RAT4.292e-1264.81Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE4.292e-1264.81Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_HUMAN4.292e-1264.81Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]
ACL6B_BOVIN4.292e-1264.81Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2... [more]
ACT_GIALA9.562e-1249.09Actin OS=Giardia lamblia PE=3 SV=1[more]
ACL6A_MOUSE9.562e-1262.96Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304985 ID=CB304985; Name=CB304985; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCATTGAAAGCTCTCAA
ACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCAAGCTGACA
CTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCTTTTG
AGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGAAATA
GAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTACTTAA
AATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGA
ATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACG
CTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAA
TGGCCCAATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAA
CGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGC
ACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTC
ATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATG
CAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGGGGAGCC
ACGACCTTGATCTTCATGCTGCTTNGAGCAAGTGC
back to top