CB304985

Overview
NameCB304985
Unique NameCB304985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACL6A_MACFA (Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = -1 
Query:  518 SMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 670
            SM++K++A     ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  375 SMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACL6A_HUMAN (Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = -1 
Query:  518 SMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 670
            SM++K++A     ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  375 SMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = -1 
Query:  518 SMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 670
            S ++KV+A     ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  387 SARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKC 440
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT9_SOLTU (Actin-82 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  578 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  301 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT8_SOLTU (Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  578 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  301 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT7_TOBAC (Actin-104 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  578 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  301 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT6_TOBAC (Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  578 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  301 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT5_TOBAC (Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  578 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  301 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT5_SOLTU (Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  578 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  301 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT4_TOBAC (Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  578 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  301 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
The following BLAST results are available for this feature:
BLAST of CB304985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
ACL6A_MACFA9.562e-1262.96Actin-like protein 6A OS=Macaca fascicularis GN=AC... [more]
ACL6A_HUMAN9.562e-1262.96Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE... [more]
ARP4_ARATH1.249e-1161.11Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]
ACT9_SOLTU1.249e-1197.22Actin-82 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT8_SOLTU1.249e-1197.22Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT7_TOBAC1.249e-1197.22Actin-104 (Fragment) OS=Nicotiana tabacum PE=3 SV=... [more]
ACT6_TOBAC1.249e-1197.22Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=... [more]
ACT5_TOBAC1.249e-1197.22Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT5_SOLTU1.249e-1197.22Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT4_TOBAC1.249e-1197.22Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304985 ID=CB304985; Name=CB304985; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCATTGAAAGCTCTCAA
ACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCAAGCTGACA
CTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCTTTTG
AGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGAAATA
GAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTACTTAA
AATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGA
ATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACG
CTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAA
TGGCCCAATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAA
CGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGC
ACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTC
ATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATG
CAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGGGGAGCC
ACGACCTTGATCTTCATGCTGCTTNGAGCAAGTGC
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