CB304985

Overview
NameCB304985
Unique NameCB304985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSJ (Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = -1
Query:  518 KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 664
            ++KV+A     ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  391 RVKVLASGNSVERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGVSYIQRKC 442          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSI (Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = -1
Query:  518 KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 664
            ++KV+A     ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  391 RVKVLASGNSVERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGVSYIQRKC 442          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTT2_MACFA (Actin-related protein T2 OS=Macaca fascicularis GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA     IK+ APP+R +S WIG SI+ SLS+F+QMW++  ++ E G S+V R+CF
Sbjct:  322 LASKDTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTAADFKEFGSSVVQRRCF 377          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTT2_HUMAN (Actin-related protein T2 OS=Homo sapiens GN=ACTRT2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA     IK+ APP+R +S WIG SI+ SLS+F+QMW++  ++ E G S+V R+CF
Sbjct:  322 LASKDTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTAADFKEFGTSVVQRRCF 377          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTT2_BOVIN (Actin-related protein T2 OS=Bos taurus GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = -1
Query:  515 LAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 682
            LA     IK+ APP+R +S WIG SI+ SLS+F+QMW++  ++ E G S++ R+CF
Sbjct:  322 LASKGTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTSADFKEFGTSVIQRRCF 377          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT4_SOLTU (Actin-65 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = -1
Query:  581 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct:  302 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 336          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT3_TOBAC (Actin-54 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = -1
Query:  575 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 685
            ALA SSMKIKVVAPPERKYSVWIGGSILASLST QQ+
Sbjct:  303 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTLQQV 339          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT1_SOLTU (Actin-42 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = -1
Query:  578 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 685
            ALA  SMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  297 ALAPCSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 332          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ARP4_GIBZE (Actin-related protein 4 OS=Gibberella zeae GN=ARP4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = -1
Query:  518 MKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 667
            +KIK+ A     ER++  WIGGSILASL TF QMWIS+ EY+E+GP++V ++C
Sbjct:  418 LKIKIHAAGLTSERRFGAWIGGSILASLGTFHQMWISRKEYEENGPNVVEKRC 470          
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT4_SOLLC (Actin-105 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = -1
Query:  578 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 685
            ALA SSMKIKVVAPPE KYSVWIGGSILASLSTFQQ
Sbjct:  301 ALAPSSMKIKVVAPPESKYSVWIGGSILASLSTFQQ 336          
The following BLAST results are available for this feature:
BLAST of CB304985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
ARP4_ORYSJ4.745e-1161.54Actin-related protein 4 OS=Oryza sativa subsp. jap... [more]
ARP4_ORYSI4.745e-1161.54Actin-related protein 4 OS=Oryza sativa subsp. ind... [more]
ACTT2_MACFA4.745e-1150.00Actin-related protein T2 OS=Macaca fascicularis GN... [more]
ACTT2_HUMAN4.745e-1150.00Actin-related protein T2 OS=Homo sapiens GN=ACTRT2... [more]
ACTT2_BOVIN4.745e-1148.21Actin-related protein T2 OS=Bos taurus GN=ACTRT2 P... [more]
ACT4_SOLTU4.745e-1197.14Actin-65 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT3_TOBAC4.745e-1191.89Actin-54 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT1_SOLTU4.745e-1194.44Actin-42 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ARP4_GIBZE6.198e-1156.60Actin-related protein 4 OS=Gibberella zeae GN=ARP4... [more]
ACT4_SOLLC6.198e-1194.44Actin-105 (Fragment) OS=Solanum lycopersicum PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304985 ID=CB304985; Name=CB304985; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCATTGAAAGCTCTCAA
ACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCAAGCTGACA
CTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCTTTTG
AGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGAAATA
GAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTACTTAA
AATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGA
ATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACG
CTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAA
TGGCCCAATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAA
CGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGC
ACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTC
ATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATG
CAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGGGGAGCC
ACGACCTTGATCTTCATGCTGCTTNGAGCAAGTGC
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