CB304985

Overview
NameCB304985
Unique NameCB304985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1083..1767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_ACHBI (Actin OS=Achlya bisexualis PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIKVVAPPERKYSVWIGGSIL+SLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  320 ALAPSTMKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKAEYDESGPSIVHRKCF 376
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT2_DROME (Actin-42A OS=Drosophila melanogaster GN=Act42A PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  320 ALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACT_PLAMG (Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTY_LIMPO (Actin-11 OS=Limulus polyphemus PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTG_XENTR (Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTG_XENLA (Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTG_TRIVU (Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTG_TRISC (Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTG_RAT (Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTG_RANLE (Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of CB304985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
ACT_ACHBI3.743e-2492.98Actin OS=Achlya bisexualis PE=3 SV=1[more]
ACT2_DROME3.743e-2492.98Actin-42A OS=Drosophila melanogaster GN=Act42A PE=... [more]
ACT_PLAMG4.888e-2491.23Actin, adductor muscle OS=Placopecten magellanicus... [more]
ACTY_LIMPO4.888e-2491.23Actin-11 OS=Limulus polyphemus PE=2 SV=1[more]
ACTG_XENTR4.888e-2491.23Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg... [more]
ACTG_XENLA4.888e-2491.23Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE... [more]
ACTG_TRIVU4.888e-2491.23Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=A... [more]
ACTG_TRISC4.888e-2491.23Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 ... [more]
ACTG_RAT4.888e-2491.23Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1... [more]
ACTG_RANLE4.888e-2491.23Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304985 ID=CB304985; Name=CB304985; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCATTGAAAGCTCTCAA
ACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCAAGCTGACA
CTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCTTTTG
AGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGAAATA
GAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTACTTAA
AATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGA
ATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACG
CTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAA
TGGCCCAATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAA
CGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGC
ACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTC
ATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATG
CAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGGGGAGCC
ACGACCTTGATCTTCATGCTGCTTNGAGCAAGTGC
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