CB304985

Overview
NameCB304985
Unique NameCB304985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTB_TRIVU (Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=ACTB PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTB_SPECI (Actin, cytoplasmic 1 OS=Spermophilus citellus GN=ACTB PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTB_SIGHI (Actin, cytoplasmic 1 OS=Sigmodon hispidus GN=ACTB PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTB_SHEEP (Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTB_RAT (Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTB_RABIT (Actin, cytoplasmic 1 OS=Oryctolagus cuniculus GN=ACTB PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTB_PONAB (Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTB_PIG (Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTB_PANTR (Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CB304985 vs. ExPASy Swiss-Prot
Match: ACTB_ORYLA (Actin, cytoplasmic 1 OS=Oryzias latipes GN=actb PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -1 
Query:  515 ALAXSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 685
            ALA S+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  319 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of CB304985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
ACTB_TRIVU4.888e-2491.23Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=A... [more]
ACTB_SPECI4.888e-2491.23Actin, cytoplasmic 1 OS=Spermophilus citellus GN=A... [more]
ACTB_SIGHI4.888e-2491.23Actin, cytoplasmic 1 OS=Sigmodon hispidus GN=ACTB ... [more]
ACTB_SHEEP4.888e-2491.23Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV... [more]
ACTB_RAT4.888e-2491.23Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb ... [more]
ACTB_RABIT4.888e-2491.23Actin, cytoplasmic 1 OS=Oryctolagus cuniculus GN=A... [more]
ACTB_PONAB4.888e-2491.23Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 ... [more]
ACTB_PIG4.888e-2491.23Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=2 SV... [more]
ACTB_PANTR4.888e-2491.23Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE... [more]
ACTB_ORYLA4.888e-2491.23Actin, cytoplasmic 1 OS=Oryzias latipes GN=actb PE... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304985 ID=CB304985; Name=CB304985; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCATTGAAAGCTCTCAA
ACAAGTATTAAATATATTTTAATAACCAAATTTATGACTGCAAGCTGACA
CTAATTAAAGTTTTCTCATACAATAGCTATTAACATTAATGTTCCTTTTG
AGAGGGGGAGAAAAAAAACCTTCAAATATGAAAATTTAGAAAATGAAATA
GAAAAGCATCACAACCACTCTTCATCTCCAGCTACAAACATCCTACTTAA
AATAAAAAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGA
ATGCAAGGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACG
CTGTAAGAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAA
TGGCCCAATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAA
CGAGACACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGC
ACTTAAAGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTC
ATCATACTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATG
CAAGGATTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGGGGAGCC
ACGACCTTGATCTTCATGCTGCTTNGAGCAAGTGC
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