CB304986

Overview
NameCB304986
Unique NameCB304986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4289 contig Csv1_Contig4289:468..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_COCIM (Autophagy-related protein 8 OS=Coccidioides immitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.726e-45
Identity = 87/115 (75.65%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            +S FK EHP E+R AE+ RIR+KY DRIPVI EK EK+D+  IDKKKYLVPADL+VGQFVYV+RKRIKLS EKAIF+FV   LPPT ALMS+IYEE+KD+DGFLY+TYSGENTFG
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDDDGFLYITYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_CHAGB (Autophagy-related protein 8 OS=Chaetomium globosum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.726e-45
Identity = 87/115 (75.65%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            +S FK EHP E+R AE+ RIR+KY DRIPVI EK EK+D+  IDKKKYLVP+DL+VGQFVYV+RKRIKLS EKAIF+FV   LPPT ALMS+IYEE+KDEDGFLY+TYSGENTFG
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_SCLS1 (Autophagy-related protein 8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atg8 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.931e-45
Identity = 86/115 (74.78%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            +S FK EHP E+R AE+ RIR+KY DRIPVI EK EK+D+  IDKKKYLVP+DL+VGQFVYV+RKRIKLS EKAIF+FV   LPPT ALMS+IYEE+KDEDGFLY++YSGENTFG
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYSDRIPVICEKVEKSDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_CRYNE (Autophagy-related protein 8 OS=Cryptococcus neoformans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.931e-45
Identity = 85/117 (72.65%), Postives = 102/117 (87.18%), Query Frame = -3
Query:  277 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 627
            M +S FK EHP ++R AE+ RIR+KY DRIPVI EKAEK+D+P IDKKKYLVPADL+VGQFVYV+RKRIKL+ EKAIF+FV + LPPT ALMS+IY+E+KDEDGFLY+ Y+ ENTFG
Sbjct:    1 MVRSKFKDEHPFDKRKAEAERIRQKYQDRIPVICEKAEKSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLAPEKAIFIFVDDILPPTAALMSSIYDEHKDEDGFLYVLYASENTFG 117          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_BOTFB (Autophagy-related protein 8 OS=Botryotinia fuckeliana (strain B05.10) GN=atg8 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.036e-44
Identity = 86/115 (74.78%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            +S FK EHP E+R AE+ RIR+KY DRIPVI EK EK+D+  IDKKKYLVP+DL+VGQFVYV+RKRIKLS EKAIF+FV   LPPT ALMS+IYEE+KDEDGFLY++YSGENTFG
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYNDRIPVICEKVEKSDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_VANPO (Autophagy-related protein 8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.767e-44
Identity = 84/115 (73.04%), Postives = 102/115 (88.70%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            KSSFK E+P E+R  ES RI EK+ +RIPVI EKAEK+D+P+IDK+KYLVP+DL+VGQFVYV+RKRI L  EKAIF+FV +TLPPT ALMSA+Y+E+KD+DGFLY+TYSGENTFG
Sbjct:    2 KSSFKSEYPFEKRKTESERITEKFQNRIPVICEKAEKSDIPEIDKRKYLVPSDLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAVYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_CANGA (Autophagy-related protein 8 OS=Candida glabrata GN=ATG8 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.767e-44
Identity = 83/116 (71.55%), Postives = 103/116 (88.79%), Query Frame = -3
Query:  274 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 621
            KSSFK E+P E+R AES RI EK+ +RIPVI EKAEK+D+P++DK+KYLVPADL+VGQFVYV+RKRI L  EKAIF+FV +TLPPT +LMS +Y+E+KD+DGFLY+TYSGENTFG+
Sbjct:    2 KSSFKSEYPFEKRKAESERISEKFQNRIPVICEKAEKSDIPEVDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTASLMSQVYQEHKDKDGFLYVTYSGENTFGY 117          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_YEAST (Autophagy-related protein 8 OS=Saccharomyces cerevisiae GN=ATG8 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.308e-44
Identity = 84/115 (73.04%), Postives = 103/115 (89.57%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            KS+FK E+P E+R AES RI +++ +RIPVI EKAEK+D+P+IDK+KYLVPADL+VGQFVYV+RKRI L  EKAIF+FV +TLPPT ALMSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct:    2 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_YEAS7 (Autophagy-related protein 8 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.308e-44
Identity = 84/115 (73.04%), Postives = 103/115 (89.57%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            KS+FK E+P E+R AES RI +++ +RIPVI EKAEK+D+P+IDK+KYLVPADL+VGQFVYV+RKRI L  EKAIF+FV +TLPPT ALMSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct:    2 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_PICPA (Autophagy-related protein 8 OS=Pichia pastoris GN=ATG8 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 80/115 (69.57%), Postives = 99/115 (86.09%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            +S FK EHP E+R AE+ RIR K+ DRIPVI EK EK+D+P++DK+KYLVP DL+VGQFVYV+RKRIK+ +EKAIF+F+ + LPPT ALMS +YEE+KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFEKRKAEAMRIRYKFADRIPVICEKVEKSDIPEVDKRKYLVPCDLTVGQFVYVIRKRIKIPSEKAIFIFIDDILPPTAALMSKVYEEHKDEDGFLYVLYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CB304986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8_COCIM2.726e-4575.65Autophagy-related protein 8 OS=Coccidioides immiti... [more]
ATG8_CHAGB2.726e-4575.65Autophagy-related protein 8 OS=Chaetomium globosum... [more]
ATG8_SCLS17.931e-4574.78Autophagy-related protein 8 OS=Sclerotinia sclerot... [more]
ATG8_CRYNE7.931e-4572.65Autophagy-related protein 8 OS=Cryptococcus neofor... [more]
ATG8_BOTFB1.036e-4474.78Autophagy-related protein 8 OS=Botryotinia fuckeli... [more]
ATG8_VANPO1.767e-4473.04Autophagy-related protein 8 OS=Vanderwaltozyma pol... [more]
ATG8_CANGA1.767e-4471.55Autophagy-related protein 8 OS=Candida glabrata GN... [more]
ATG8_YEAST2.308e-4473.04Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_YEAS72.308e-4473.04Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_PICPA2.551e-4369.57Autophagy-related protein 8 OS=Pichia pastoris GN=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304986 ID=CB304986; Name=CB304986; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTAAATTAGTTTCCTCC
ATTCAATATCTACCGCTAAGGGACAATTTTAACGAGAGTTACTTCTATCA
TCAACTGATGCAATCAACCCAAAATAAAAACAATCATCAACTGATGCAAT
CAACCCCAAATAAAAACAAGATATCAGTGAACATGTCTGGGAATGGCTTA
AAAGGGATCAACTGAGAATATACAACTTTCAAATTTTATGATACATGGCT
TGTTGCCTTCGCTCTTAAAATGACCAACCGAAGGTATTCTCTCCACTGTA
AGTCATGTAAAGAAAACCATCTTCATCCTTGTTTTCCTCATATATAGCAG
ACATCAAGGCACCGGTTGGAGGTAAAGTATTCTTAACAAAAACAAATATG
GCCTTTTCTGCACTGAGCTTAATCCTTTTACGGACAACATAAACAAATTG
TCCCACAGATAAATCCGCTGGGACAAGGTATTTTTTCTTGTCAATGTCAG
GAACATCAGTCTTCTCAGCCTTCTCCACAATCACCGGAATCCTGTCAGGA
TACTTCTCTCTAATGCGAGCAGATTCTGCCAGCCTCCTCTCCAATGGATG
CTCGAGCTTGAATGAACTTTTGGCCATGGCGAAACTGACGCTACGATGAC
TCTTCA
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