CB304986

Overview
NameCB304986
Unique NameCB304986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4289 contig Csv1_Contig4289:468..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_CANAL (Autophagy-related protein 8 OS=Candida albicans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.684e-43
Identity = 80/115 (69.57%), Postives = 99/115 (86.09%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            +S FK EHP E+R AE+ARI +++ DR+PVI EK E +D+P+IDK+KYLVP DL+VGQFVYV+RKRIKL +EKAIF+FV + LPPT AL+S IYEE+KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFEKRQAEAARIAQRFKDRVPVICEKVENSDIPEIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_SCHPO (Autophagy-related protein 8 OS=Schizosaccharomyces pombe GN=atg8 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.423e-43
Identity = 84/118 (71.19%), Postives = 97/118 (82.20%), Query Frame = -3
Query:  268 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGWSF 621
            +S FK +   E+R  ES RIREKYPDRIPVI EK +K+D+  IDKKKYLVP+DL+VGQFVYV+RKRIKLS EKAIF+F+   LPPT ALMS IYEE+K EDGFLY+TYSGENTFG  F
Sbjct:    2 RSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVF 119          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_PICST (Autophagy-related protein 8 OS=Pichia stipitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.423e-43
Identity = 80/115 (69.57%), Postives = 98/115 (85.22%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            +S FK EHP E+R AE+ RI +++ DR+PVI EK E +D+P+IDK+KYLVP DLSVGQFVYV+RKRIKL +EKAIF+FV + LPPT AL+S IYEE+KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFEKRQAEATRIAQRFKDRVPVICEKVENSDIPEIDKRKYLVPVDLSVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_PICAN (Autophagy-related protein 8 OS=Pichia angusta GN=ATG8 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.266e-42
Identity = 81/115 (70.43%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            +S FK EHP ERR AE++RIR K+ DRIPVI EK E++D+P+IDK+KYLVP+DL+VGQFVYV+RKRI+L +EKAIF+FV + LPPT +LMS IYE+ KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFERRKAEASRIRGKFLDRIPVICEKVEESDIPEIDKRKYLVPSDLTVGQFVYVIRKRIQLPSEKAIFIFVNDILPPTASLMSTIYEQYKDEDGFLYILYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_LODEL (Autophagy-related protein 8 OS=Lodderomyces elongisporus GN=ATG8 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.266e-42
Identity = 79/115 (68.70%), Postives = 99/115 (86.09%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            +S FK EHP E+R AE+ARI +++ DR+PVI EK E +D+P+IDK+KYLVP DL+VGQFVYV+RKRIKL +EKAIF+FV + LPPT AL+S IYEE+KD+DGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFEKRQAEAARIAQRFKDRVPVICEKVENSDIPEIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDDDGFLYVLYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_DEBHA (Autophagy-related protein 8 OS=Debaryomyces hansenii GN=ATG8 PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.654e-42
Identity = 80/115 (69.57%), Postives = 98/115 (85.22%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            +S FK EHP E+R AE+ RI +++ DR+PVI EKAE +D+ +IDK+KYLVP DLSVGQFVYV+RKRIKL +EKAIF+F+ + LPPT ALMS IYEE+KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFEKRKAEATRITQRFNDRLPVICEKAENSDIQEIDKRKYLVPGDLSVGQFVYVIRKRIKLPSEKAIFIFINDILPPTAALMSTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_ASHGO (Autophagy-related protein 8 OS=Ashbya gossypii GN=ATG8 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.811e-42
Identity = 78/114 (68.42%), Postives = 101/114 (88.60%), Query Frame = -3
Query:  277 SSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 618
            SSFK E+P E+R AES RI  ++ +R+PVI E+AEK+D+P++D++KYLVPADL+VGQFVYV+R+RIKL AEKAIF+FV +TLPPT ALM A+Y+E+KD+DGFLY+ YSGENTFG
Sbjct:    2 SSFKSEYPFEKRKAESERICSQFENRVPVICERAEKSDIPEVDRRKYLVPADLTVGQFVYVIRRRIKLPAEKAIFIFVNDTLPPTAALMFAVYQEHKDKDGFLYVKYSGENTFG 115          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_KLULA (Autophagy-related protein 8 OS=Kluyveromyces lactis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 80/115 (69.57%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            KS+FK E P E+R AES RI +K+ +RIPVI E+  K+D+PDIDK+KYLVP DL+VGQFVYV+RKRIKL AEKAIF+FV +TLPPT ALMS+IY+++KD+DGFLY++YS ENTFG
Sbjct:    2 KSAFKSEFPFEKRKAESERIVQKFHNRIPVICERGGKSDIPDIDKRKYLVPGDLTVGQFVYVIRKRIKLPAEKAIFIFVNDTLPPTAALMSSIYQQHKDKDGFLYVSYSSENTFG 116          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: ATG8_DICDI (Autophagy-related protein 8 OS=Dictyostelium discoideum GN=atg8 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.074e-41
Identity = 81/115 (70.43%), Postives = 98/115 (85.22%), Query Frame = -3
Query:  277 SSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRI-KLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 618
            SSFK +HPL++R   + RIR KY DRIPVIVEKA ++D PDIDKKKYLVPAD++VG+FVY +RK + K+SAEKAI++FV NT+PPT AL+S IYE  KDEDGFLY+TYSGENTFG
Sbjct:    5 SSFKNDHPLDKRREVAERIRSKYLDRIPVIVEKAPRSDAPDIDKKKYLVPADITVGKFVYEIRKHMTKVSAEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFG 119          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL2_RAT (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = -3
Query:  274 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 621
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   + + DIDK+KYLVP+D++V QF++++RKRI+L +EKAIF+FV  T+P +   M  +YE+ KDEDGFLY+ YSGENTFG+
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
The following BLAST results are available for this feature:
BLAST of CB304986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8_CANAL5.684e-4369.57Autophagy-related protein 8 OS=Candida albicans GN... [more]
ATG8_SCHPO7.423e-4371.19Autophagy-related protein 8 OS=Schizosaccharomyces... [more]
ATG8_PICST7.423e-4369.57Autophagy-related protein 8 OS=Pichia stipitis GN=... [more]
ATG8_PICAN1.266e-4270.43Autophagy-related protein 8 OS=Pichia angusta GN=A... [more]
ATG8_LODEL1.266e-4268.70Autophagy-related protein 8 OS=Lodderomyces elongi... [more]
ATG8_DEBHA1.654e-4269.57Autophagy-related protein 8 OS=Debaryomyces hansen... [more]
ATG8_ASHGO4.811e-4268.42Autophagy-related protein 8 OS=Ashbya gossypii GN=... [more]
ATG8_KLULA8.207e-4269.57Autophagy-related protein 8 OS=Kluyveromyces lacti... [more]
ATG8_DICDI9.074e-4170.43Autophagy-related protein 8 OS=Dictyostelium disco... [more]
GBRL2_RAT5.153e-3659.48Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304986 ID=CB304986; Name=CB304986; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTAAATTAGTTTCCTCC
ATTCAATATCTACCGCTAAGGGACAATTTTAACGAGAGTTACTTCTATCA
TCAACTGATGCAATCAACCCAAAATAAAAACAATCATCAACTGATGCAAT
CAACCCCAAATAAAAACAAGATATCAGTGAACATGTCTGGGAATGGCTTA
AAAGGGATCAACTGAGAATATACAACTTTCAAATTTTATGATACATGGCT
TGTTGCCTTCGCTCTTAAAATGACCAACCGAAGGTATTCTCTCCACTGTA
AGTCATGTAAAGAAAACCATCTTCATCCTTGTTTTCCTCATATATAGCAG
ACATCAAGGCACCGGTTGGAGGTAAAGTATTCTTAACAAAAACAAATATG
GCCTTTTCTGCACTGAGCTTAATCCTTTTACGGACAACATAAACAAATTG
TCCCACAGATAAATCCGCTGGGACAAGGTATTTTTTCTTGTCAATGTCAG
GAACATCAGTCTTCTCAGCCTTCTCCACAATCACCGGAATCCTGTCAGGA
TACTTCTCTCTAATGCGAGCAGATTCTGCCAGCCTCCTCTCCAATGGATG
CTCGAGCTTGAATGAACTTTTGGCCATGGCGAAACTGACGCTACGATGAC
TCTTCA
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