CB304986

Overview
NameCB304986
Unique NameCB304986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4289 contig Csv1_Contig4289:468..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = -3
Query:  274 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 612
            FK       R  E  +IR+++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = -3
Query:  274 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 612
            FK       R  E  +IR+++P +IPVI+E  K EK  +P +DK K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.548e-15
Identity = 38/115 (33.04%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  277 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAE-KTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 615
            SFK   P   R  +   IR + P+++PVI+E+ + +  +P +D+ K+LVP  ++V + + +VR+R++L  ++A F+ V + ++      MS +Y + +D DGF+YM Y+ +  FG
Sbjct:   16 SFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130          
The following BLAST results are available for this feature:
BLAST of CB304986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MLP3A_MOUSE3.140e-1738.79Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN3.140e-1738.79Microtubule-associated proteins 1A/1B light chain ... [more]
LGG2_CAEEL6.548e-1533.04Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304986 ID=CB304986; Name=CB304986; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTAAATTAGTTTCCTCC
ATTCAATATCTACCGCTAAGGGACAATTTTAACGAGAGTTACTTCTATCA
TCAACTGATGCAATCAACCCAAAATAAAAACAATCATCAACTGATGCAAT
CAACCCCAAATAAAAACAAGATATCAGTGAACATGTCTGGGAATGGCTTA
AAAGGGATCAACTGAGAATATACAACTTTCAAATTTTATGATACATGGCT
TGTTGCCTTCGCTCTTAAAATGACCAACCGAAGGTATTCTCTCCACTGTA
AGTCATGTAAAGAAAACCATCTTCATCCTTGTTTTCCTCATATATAGCAG
ACATCAAGGCACCGGTTGGAGGTAAAGTATTCTTAACAAAAACAAATATG
GCCTTTTCTGCACTGAGCTTAATCCTTTTACGGACAACATAAACAAATTG
TCCCACAGATAAATCCGCTGGGACAAGGTATTTTTTCTTGTCAATGTCAG
GAACATCAGTCTTCTCAGCCTTCTCCACAATCACCGGAATCCTGTCAGGA
TACTTCTCTCTAATGCGAGCAGATTCTGCCAGCCTCCTCTCCAATGGATG
CTCGAGCTTGAATGAACTTTTGGCCATGGCGAAACTGACGCTACGATGAC
TCTTCA
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