CB304987

Overview
NameCB304987
Unique NameCB304987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:38..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.428e-35
Identity = 79/158 (50.00%), Postives = 113/158 (71.52%), Query Frame = -2
Query:   47 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 517
            RG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL+IFS RG+LYE+ +++S+  T+ERY+K C+     P ++  EA     QQE  KL+ +   +Q   R++LGE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E
Sbjct:   18 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY-ANNSVRGTIERYKKACSDAVNPPTIT--EANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKRE 172          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.974e-35
Identity = 78/158 (49.37%), Postives = 115/158 (72.78%), Query Frame = -2
Query:   47 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 517
            RG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T+ERY+K C+  +   ++S  EA     QQE  KL+A+   LQ   RN+LGE L  L+ ++L++LE++++  + +IRS + + +   +  +Q +E
Sbjct:   19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTGSIS--EANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKRE 173          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.303e-34
Identity = 78/163 (47.85%), Postives = 111/163 (68.10%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            RG++E+KRIEN  NRQVTF KRR+GLLKKAYELSVLCDAEVAL++FS+RG+LYE+ S++S+ +T+ERY+K N      +  A E      QQE  KLK +   LQ S R L+G+ +  +N +EL+ LE +LD  L +IR+ + + +   +  +Q +E  L  +
Sbjct:   45 RGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEY-SNNSVKETIERYKKANSDTSNASTVA-EINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQND 205          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.303e-34
Identity = 78/158 (49.37%), Postives = 113/158 (71.52%), Query Frame = -2
Query:   47 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 517
            RG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL++FSNRG+LYE+ +++S+  T+ERY+K C+  +   +VS  EA     QQE  KL+A+   L    RN++GE L  +  KEL++LE++++  + +IRS + + +   +  +Q +E
Sbjct:   19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEY-ANNSVKATIERYKKACSDSSNTGSVS--EANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKRE 173          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.303e-34
Identity = 77/163 (47.24%), Postives = 113/163 (69.33%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            RG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +++++  T+ERY+K    +   + + +E      QQE  KL+ + + +Q S RNL+G+ L  L+ KEL+ +E +L+ ++ +IRS + + +L  +   Q +E  L  E
Sbjct:    3 RGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNNIRSTIERYKKACSDSTNTS-TVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNE 163          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.902e-34
Identity = 77/157 (49.04%), Postives = 109/157 (69.43%), Query Frame = -2
Query:   47 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 517
            RG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T+ERY+K    +     S  EA     QQE  KL+A+   LQ   RN LGE L  LN ++L +LE++++  + +IR+ + + +   +  +Q +E
Sbjct:   19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTG-SIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKRE 173          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.790e-34
Identity = 84/163 (51.53%), Postives = 109/163 (66.87%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            RG+ E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF SSSS+ KT+ERY+K        +   R      S+ E   L  + E L+ S R ++GE L   + +EL+ LE QLD SL +IR+ + Q + +   +L+ KE+ L  E
Sbjct:    3 RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNH--KRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAE 163          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 79/163 (48.47%), Postives = 109/163 (66.87%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            RGR ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+ S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL +IR  +T+ +   + +L+ KE+ L ++
Sbjct:    3 RGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKD 163          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.881e-33
Identity = 73/162 (45.06%), Postives = 114/162 (70.37%), Query Frame = -2
Query:   47 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCN-----YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 517
            RGR+E+KRIEN  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++++  T++RY+K +      GAP   V+A++      QQE  KL+ + + LQ + ++L+G+ +  L+ KEL+ LE +L+  + +IR+ + + +   +  +  +E
Sbjct:    3 RGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYY----QQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKRE 160          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.457e-33
Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            RGR ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+ S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL  IR  +T+ +   + +L+ KE+ L ++
Sbjct:    3 RGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKD 163          
The following BLAST results are available for this feature:
BLAST of CB304987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL5_ARATH3.428e-3550.00Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AG_TOBAC9.974e-3549.37Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
MAD58_ORYSJ1.303e-3447.85MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AG_SOLLC1.303e-3449.37Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AGL11_ARATH1.303e-3447.24Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AG_PETHY2.902e-3449.04Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AGL14_ARATH3.790e-3451.53Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD56_ORYSJ8.444e-3448.47MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD13_ORYSJ1.881e-3345.06MADS-box transcription factor 13 OS=Oryza sativa s... [more]
MAD56_ORYSI2.457e-3348.47MADS-box transcription factor 56 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304987 ID=CB304987; Name=CB304987; organism=Citrus sinensis; type=EST; length=518bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCGCTCAGCAACTGTTCC
TTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTGAGTTCTTGTTGA
TCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAAGTGACTCAAGCT
CTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGATTCCTTTGGGAT
CTCTGTAGGGCTTCATATCGTGCTTTAAGCTTCAAATATTCTTGCTGGCT
ACTTAGCTCCAGGGCCTCCCTTGCGGACACATTCGGTTCTGGTGCTCCAT
AGTTGCACTTCCGGTACCTCTCAAGCGTTTTGACCATGCTTGAACTACTG
CAAAACTCGTACAGCTTTCCTCTATTGGAGAAAATGATGAGAGCAACCTC
AGCATCACAAAGAACGGAAAGCTCATAAGCTTTCTTCAAAAGGCCATTTC
TTCTCTTTGCAAAGGTCACTTGCCTGTTGATCTTGTTCTCTATCCTCTTC
AACTCAACCCTACCCCTT
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