CB304988
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_CAPHI (60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.142e-37 Identity = 73/146 (50.00%), Postives = 102/146 (69.86%), Query Frame = -2 Query: 235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666 R +F+RPFRK G +PL+TY+R Y+ GD VD+K G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV +I+ KRI+VR+EH++ S+ + F R K+ND+ K +AK +G + KRQP P+ V G E + PIPY+ Sbjct: 12 RYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_RAT (60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3) HSP 1 Score: 152.14 bits (383), Expect = 2.368e-36 Identity = 72/146 (49.32%), Postives = 100/146 (68.49%), Query Frame = -2 Query: 235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666 R +F+RPFRK G +PL+TY+R YK GD VD+K G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV +I+ KRI+VR+EH++ S+ + F R K+ND+ K +AK +G + QP P+ V G E + PIPY+ Sbjct: 12 RYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLNGQPAPPREAHFVRTNGKEPELLEPIPYE 157
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_MOUSE (60S ribosomal protein L21 OS=Mus musculus GN=Rpl21 PE=2 SV=3) HSP 1 Score: 151.754 bits (382), Expect = 3.093e-36 Identity = 72/146 (49.32%), Postives = 100/146 (68.49%), Query Frame = -2 Query: 235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666 R +F+RPFRK G +PL+TY+R YK GD VD+K G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV +I+ KRI+VR+EH++ S+ + F R K+ND+ K +AK +G + KR P+ V G E + PIPY+ Sbjct: 12 RYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYE 157
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_PYUST (60S ribosomal protein L21 (Fragment) OS=Pyura stolonifera GN=RPL21 PE=2 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32 Identity = 67/144 (46.53%), Postives = 100/144 (69.44%), Query Frame = -2 Query: 235 DLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPG-FMVEGATLETVTPIPYD 663 D+F++ FR++G IPL+ YL YK GD VD+K +G+V K PHK YHG+TGR++NVT+ A+G+ +NKQV RII KRI+VR+EH++ S+ F R +N+ + +A+ + ++ KRQP+ P+ G F+ A E V PIPY+ Sbjct: 12 DMFSKKFRERGAIPLNKYLTVYKKGDIVDIKGDGSVQKVCPHKVYHGKTGRIFNVTQHAVGIIVNKQVRGRIIAKRINVRIEHIKHSKSRISFIQRVHENERKRKEAREKKIRVNLKRQPQQPRTGHFVRSSAEPELVEPIPYE 155
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_CAEEL (60S ribosomal protein L21 OS=Caenorhabditis elegans GN=rpl-21 PE=1 SV=3) HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32 Identity = 70/149 (46.98%), Postives = 98/149 (65.77%), Query Frame = -2 Query: 229 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGE-VISTKRQPKGPKPGFMV--EGATLETVTPIPYDVV 666 R +FAR FRK G LSTY YK GD VD+K NGA KGMP K YHGRTGR++NVT+ A+G+ +NK+V I+ KRI++R+EH++PS+C +F R K NDE + AK+ G+ V + KR P P+ V + E + P+ +++V Sbjct: 12 RYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIV 160
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_ENTHI (60S ribosomal protein L21 OS=Entamoeba histolytica GN=RPL21 PE=2 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 1.756e-31 Identity = 68/153 (44.44%), Postives = 98/153 (64.05%), Query Frame = -2 Query: 235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRK-------KKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLE--TVTPIPYD 666 R LF RPFR G ST L TYK+GDYV + N ++ G+P+K +HG+TGRVWNV AIGV +NK+V NRI+ KR+H+ EH++PS C ++F RK K+N +LK + K + KR PK P+P +++GA ++ TV P+ ++ Sbjct: 12 RKLFKRPFRGHGLSNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKVNNRIVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNIQLKKEGKPL-LPLPAKRLPKQPRPAELIKGADIKFTTVAPLKFE 163
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_ENCCU (60S ribosomal protein L21 OS=Encephalitozoon cuniculi GN=RPL21 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.902e-26 Identity = 60/126 (47.62%), Postives = 89/126 (70.63%), Query Frame = -2 Query: 292 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVIS-TKRQPKGPK 666 R LF++ RK G +S YL Y+IGD VD+ VN A+ KGMPHK+YHGRTGRV++V R++ V + K+V + + K+I VR+EHV+ SRC+EE + R E+ DA++RG V++ +KR+ +GP+ Sbjct: 11 RYLFSQDHRKHGVAHVSKYLEKYEIGDMVDILVNPAMMKGMPHKYYHGRTGRVYDVKPRSLNVALYKRVRGKYVIKKIIVRIEHVRKSRCSEESQKRILMAAEMARDAESRGVVLAPSKRKIEGPR 136
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_PIG (60S ribosomal protein L21 (Fragment) OS=Sus scrofa GN=RPL21 PE=3 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13 Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = -2 Query: 514 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTG 666 R +F+RPFRK G +PL+TY+R YK GD VD+K G V KG+PHK YHG+TG Sbjct: 12 RYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGLPHKCYHGKTG 62
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_STAMF (50S ribosomal protein L21e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl21e PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11 Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = -2 Query: 400 RDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR 666 R +F++ R+KG +P LS + YK GD V + VN A+HKGMPH+ YHG+TG + + KR + +G++ +K + +R EH++P++ Sbjct: 13 RKVFSKHIREKGAVPPLSLLMIDYKPGDKVHIVVNPAIHKGMPHRRYHGKTGTI--IGKRGKAYIVKITLGDK--EKTLFIRPEHLRPAK 98 The following BLAST results are available for this feature:
BLAST of CB304988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304988 ID=CB304988; Name=CB304988; organism=Citrus sinensis; type=EST; length=667bpback to top |