CB304988

Overview
NameCB304988
Unique NameCB304988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304988_ssr365 microsatellite CB304988_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2047 contig Csv1_Contig2047:153..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_CAPHI (60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.142e-37
Identity = 73/146 (50.00%), Postives = 102/146 (69.86%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666
            R +F+RPFRK G +PL+TY+R Y+ GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:   12 RYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_RAT (60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.368e-36
Identity = 72/146 (49.32%), Postives = 100/146 (68.49%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666
            R +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +    QP  P+    V   G   E + PIPY+
Sbjct:   12 RYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLNGQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_MOUSE (60S ribosomal protein L21 OS=Mus musculus GN=Rpl21 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.093e-36
Identity = 72/146 (49.32%), Postives = 100/146 (68.49%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666
            R +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KR    P+    V   G   E + PIPY+
Sbjct:   12 RYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_PYUST (60S ribosomal protein L21 (Fragment) OS=Pyura stolonifera GN=RPL21 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32
Identity = 67/144 (46.53%), Postives = 100/144 (69.44%), Query Frame = -2
Query:  235 DLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPG-FMVEGATLETVTPIPYD 663
            D+F++ FR++G IPL+ YL  YK GD VD+K +G+V K  PHK YHG+TGR++NVT+ A+G+ +NKQV  RII KRI+VR+EH++ S+    F  R  +N+  + +A+ +   ++ KRQP+ P+ G F+   A  E V PIPY+
Sbjct:   12 DMFSKKFRERGAIPLNKYLTVYKKGDIVDIKGDGSVQKVCPHKVYHGKTGRIFNVTQHAVGIIVNKQVRGRIIAKRINVRIEHIKHSKSRISFIQRVHENERKRKEAREKKIRVNLKRQPQQPRTGHFVRSSAEPELVEPIPYE 155          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_CAEEL (60S ribosomal protein L21 OS=Caenorhabditis elegans GN=rpl-21 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 70/149 (46.98%), Postives = 98/149 (65.77%), Query Frame = -2
Query:  229 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGE-VISTKRQPKGPKPGFMV--EGATLETVTPIPYDVV 666
            R +FAR FRK G   LSTY   YK GD VD+K NGA  KGMP K YHGRTGR++NVT+ A+G+ +NK+V   I+ KRI++R+EH++PS+C  +F  R K NDE +  AK+ G+ V + KR P  P+    V  +    E + P+ +++V
Sbjct:   12 RYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIV 160          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_ENTHI (60S ribosomal protein L21 OS=Entamoeba histolytica GN=RPL21 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.756e-31
Identity = 68/153 (44.44%), Postives = 98/153 (64.05%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRK-------KKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLE--TVTPIPYD 666
            R LF RPFR  G    ST L TYK+GDYV +  N ++  G+P+K +HG+TGRVWNV   AIGV +NK+V NRI+ KR+H+  EH++PS C ++F  RK       K+N +LK + K     +  KR PK P+P  +++GA ++  TV P+ ++
Sbjct:   12 RKLFKRPFRGHGLSNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKVNNRIVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNIQLKKEGKPL-LPLPAKRLPKQPRPAELIKGADIKFTTVAPLKFE 163          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_ENCCU (60S ribosomal protein L21 OS=Encephalitozoon cuniculi GN=RPL21 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.902e-26
Identity = 60/126 (47.62%), Postives = 89/126 (70.63%), Query Frame = -2
Query:  292 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVIS-TKRQPKGPK 666
            R LF++  RK G   +S YL  Y+IGD VD+ VN A+ KGMPHK+YHGRTGRV++V  R++ V + K+V  + + K+I VR+EHV+ SRC+EE + R     E+  DA++RG V++ +KR+ +GP+
Sbjct:   11 RYLFSQDHRKHGVAHVSKYLEKYEIGDMVDILVNPAMMKGMPHKYYHGRTGRVYDVKPRSLNVALYKRVRGKYVIKKIIVRIEHVRKSRCSEESQKRILMAAEMARDAESRGVVLAPSKRKIEGPR 136          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_PIG (60S ribosomal protein L21 (Fragment) OS=Sus scrofa GN=RPL21 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = -2
Query:  514 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTG 666
            R +F+RPFRK G +PL+TY+R YK GD VD+K  G V KG+PHK YHG+TG
Sbjct:   12 RYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGLPHKCYHGKTG 62          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_STAMF (50S ribosomal protein L21e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl21e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = -2
Query:  400 RDLFARPFRKKGYIP-LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR 666
            R +F++  R+KG +P LS  +  YK GD V + VN A+HKGMPH+ YHG+TG +  + KR     +   +G++  +K + +R EH++P++
Sbjct:   13 RKVFSKHIREKGAVPPLSLLMIDYKPGDKVHIVVNPAIHKGMPHRRYHGKTGTI--IGKRGKAYIVKITLGDK--EKTLFIRPEHLRPAK 98          
The following BLAST results are available for this feature:
BLAST of CB304988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RL21_CAPHI2.142e-3750.0060S ribosomal protein L21 OS=Capra hircus GN=RPL21... [more]
RL21_RAT2.368e-3649.3260S ribosomal protein L21 OS=Rattus norvegicus GN=... [more]
RL21_MOUSE3.093e-3649.3260S ribosomal protein L21 OS=Mus musculus GN=Rpl21... [more]
RL21_PYUST1.589e-3246.5360S ribosomal protein L21 (Fragment) OS=Pyura stol... [more]
RL21_CAEEL3.539e-3246.9860S ribosomal protein L21 OS=Caenorhabditis elegan... [more]
RL21_ENTHI1.756e-3144.4460S ribosomal protein L21 OS=Entamoeba histolytica... [more]
RL21_ENCCU2.902e-2647.6260S ribosomal protein L21 OS=Encephalitozoon cunic... [more]
RL21_PIG2.817e-1362.7560S ribosomal protein L21 (Fragment) OS=Sus scrofa... [more]
RL21_STAMF4.498e-1138.8950S ribosomal protein L21e OS=Staphylothermus mari... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_C04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_C04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304988 ID=CB304988; Name=CB304988; organism=Citrus sinensis; type=EST; length=667bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCGGAAAACATCTCTTGTT
TCTAATATAAAATGAAGATTAAAAATAAACATCTCTGCAATTGCAGTTCC
TCTCCAAAAACAAAACTAATAAGGATGAAAATACATCCAAATAAGACCAT
GTCCAGAAAAGTCTGCAACAAGTAACAAAACAGCAACAATACCAAAAAGA
TAACCTAGTAACCACCCTTAAGATCATTGACGACATCATAAGGAATAGGA
GTGACAGTTTCCAATGTTGCACCTTCCACCATGAAACCTGGTTTAGGGCC
CTTTGGCTGCCTCTTTGTACTGATGACCTCACCTCTTGCCTTAGCATCTG
CCTTGAGCTCATCATTCTTCTTCTTCCTCAGCTTGAACTCCTCGGTACAC
CTTGAAGGTTGAACATGCTCCACACGAACATGAATCCTCTTCTTGATGAT
CCTGTTACCAACCTGCTTGTTAATCTCCACGCCGATGGCGCGCTTGGTGA
CATTCCAGACACGGCCTGTACGCCCATGGTAGAACTTGTGGGGCATACCT
TTGTGAACGGCGCCGTTCACTTTGACGTCAACGTAGTCGCCGATTTTGTA
AGTCCTAAGGTAAGTGGACAAGGGGATGTAACCCTTCTTTCTGAAGGGGC
GTGCGAACAAATCCCTT
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