CB304990

Overview
NameCB304990
Unique NameCB304990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C77A2_SOLME (Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.458e-13
Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = -2
Query:  239 AVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERF-LGS-NADFKG-QNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW-KLDNHNMDMEDKFGLTVQKAQPLHA 643
            AVVKE                 +  ++ G+ +P G  V + +  I  D + W  P  F P+RF LG  +AD  G    ++IPFG GRRICPGL +A   + LML  L+  F+W   +N  +D  +K   TV     L A
Sbjct:  367 AVVKELLRKHPPTYMSLTHAVTEPAKLGGYDIPTGVNVEIFLPGISDDPNLWSEPEKFDPDRFYLGKEDADITGVSGVKMIPFGMGRRICPGLNMATVHVSLMLARLVQEFEWADPENTRVDFTEKLEFTVVMKNTLRA 505          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71AS_ARATH (Putative cytochrome P450 71A28 OS=Arabidopsis thaliana GN=CYP71A28 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.458e-13
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = -2
Query:  233 VFVNVWAIGRDESTWDNPHT--FIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMED---KFGLTVQKAQPLHAVP 532
            VF+N WAI RD   W  P+   F PER L    +F+GQ+F  IPFG+GRR+CP +  A  ++ + L + +  F+W+++   +  +D   + G+ V    PL A P
Sbjct:  378 VFINAWAIHRDTEKW-GPYAEEFKPERHLDLPLNFQGQDFNFIPFGSGRRLCPDIDFATMLIEVGLANFVYRFNWRVETRPLGDDDGLKQTGMEVCHKFPLIAFP 481          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71AR_ARATH (Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=CYP71A27 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.516e-13
Identity = 36/120 (30.00%), Postives = 65/120 (54.17%), Query Frame = -2
Query:  233 DVEIAGFTVPKGAQVFVNVWAIGRDESTWD-NPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-----DNHNMDMEDKFGLTVQKAQPLHAVP 574
            DV++ G+ +  G  V +N WA+ R+ + W  + + + PER       F+  + + +PFGAGRR+CPG+  ++ +  L L +L+  F+W+L      +   D+ +  G+ V +  PL   P
Sbjct:  374 DVQLKGYDISAGTHVIINAWALQRNPAIWGLDANEYRPERHFWYEFGFQRTDSKFVPFGAGRRLCPGIGFSLVLSKLALANLVKRFNWRLKVGPVGDDKPDLAEASGIDVCRKFPLIVFP 493          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C75AK_ARATH (Cytochrome P450 705A20 OS=Arabidopsis thaliana GN=CYP705A20 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = -2
Query:  236 EIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMEDKFGLTVQKAQPLHAV 568
            E+ GF + +   + VN +A+ RD +TW++P  F PERFL    + +    + I FG+GRR CPG  LA   +   +G+++  FD  +    + M++  GL +  A PL  +
Sbjct:  385 EMKGFYIAEKTTLVVNAYAVMRDPTTWEDPDEFKPERFLRQEEERRA--LKHIAFGSGRRGCPGSNLATIFIGTAIGTMVQCFDLSIKGDKVKMDEVGGLNLTMAHPLECI 493          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.703e-13
Identity = 36/111 (32.43%), Postives = 58/111 (52.25%), Query Frame = -2
Query:  317 AVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 643
            AV+KE                  D ++ GF +P  +++ VN W +  + + W  P  F PERFL   S+ +  G +F  +PFG GRR CPG+ LA+ +L + +G L+ + +
Sbjct:  360 AVIKETLRLRMAIPLLVPHMNLHDPKLNGFDIPAESKILVNAWWLPNNPAHWKKPEEFRPERFLEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNVE 470          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: CP17A_SQUAC (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalus acanthias GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.703e-13
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = -2
Query:  260 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFE-LIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTVQ 574
            D  I  +T+PKG +V +N+WAI  DE  W NP  F P RFL  +  +   + E  +PFGAG R+C G  LA   L L    ++  F  ++       D E KFG+ +Q
Sbjct:  381 DSSIGDYTIPKGTRVIINLWAIHHDEKEWKNPDAFDPGRFLDEDGKYVCSSSESYLPFGAGTRVCLGEMLARMELFLFTSWILQRFTVQVPPGYPPPDKEGKFGIVLQ 488          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: CP2U1_RAT (Cytochrome P450 2U1 OS=Rattus norvegicus GN=Cyp2u1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = -2
Query:  263 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTV 565
            + G+++PKG  V  N+W+I RD   W+ P  F P RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ SF + L   +    M  +FGLT+
Sbjct:  417 LQGYSIPKGTVVLPNLWSIHRDPVIWEKPDDFCPHRFLDDQGQLLKRETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQSFTFALPEGSEKPIMTGRFGLTL 518          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: CP2D6_PANPA (Cytochrome P450 2D6 OS=Pan paniscus GN=CYP2D6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  308 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 574
            D+E+ GF +PKG  +F N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L   SL+  F + +
Sbjct:  381 DIEVQGFRIPKGTTLFTNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSV 468          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: CP1A1_CANFA (Cytochrome P450 1A1 OS=Canis familiaris GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = -2
Query:  242 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQPLH 574
            D  ++GF +PKG  VFVN W I  D+  W NP  F PERFL  +    K  + ++I FG G+R C G  +A   + L L  L+   ++ + +   +DM   +GLT++ A+  H
Sbjct:  397 DTSLSGFYIPKGRCVFVNQWQINHDQKLWGNPSEFQPERFLTLDGTINKALSEKVILFGLGKRKCIGETIARLEVFLFLAILLQQVEFSVPEGTKVDMTPIYGLTMKHARCEH 509          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: CP1A1_BALAC (Cytochrome P450 1A1 OS=Balaenoptera acutorostrata GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = -2
Query:  242 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQPLH 574
            D  + GF +PKG  VFVN W I  D+  WD+P  F PERFL ++    K  + ++I FG G+R C G  +A   + L L  L+   ++++     +DM   +GLT++ A   H
Sbjct:  397 DTSLNGFYIPKGRCVFVNQWQINHDQKLWDDPSAFWPERFLTADGTINKALSEKVILFGLGKRKCIGETIARWEVFLFLAILLQQVEFRVTPGVKVDMTPVYGLTMKHAHCEH 509          
The following BLAST results are available for this feature:
BLAST of CB304990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
C77A2_SOLME3.458e-1334.53Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77... [more]
C71AS_ARATH3.458e-1337.14Putative cytochrome P450 71A28 OS=Arabidopsis thal... [more]
C71AR_ARATH4.516e-1330.00Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=C... [more]
C75AK_ARATH5.898e-1333.33Cytochrome P450 705A20 OS=Arabidopsis thaliana GN=... [more]
TCMO_MEDSA7.703e-1332.43Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
CP17A_SQUAC7.703e-1337.96Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalu... [more]
CP2U1_RAT1.006e-1240.38Cytochrome P450 2U1 OS=Rattus norvegicus GN=Cyp2u1... [more]
CP2D6_PANPA1.314e-1241.11Cytochrome P450 2D6 OS=Pan paniscus GN=CYP2D6 PE=3... [more]
CP1A1_CANFA1.314e-1236.28Cytochrome P450 1A1 OS=Canis familiaris GN=CYP1A1 ... [more]
CP1A1_BALAC1.314e-1236.28Cytochrome P450 1A1 OS=Balaenoptera acutorostrata ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_C08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_C08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304990 ID=CB304990; Name=CB304990; organism=Citrus sinensis; type=EST; length=644bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATGCTATTAAATCGCATGA
CTTTATAGTTTATTGAAGATTAACTCCGTTAAGTTGCGTGTCTACATAAA
AAAAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTA
ACCACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGG
CTACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGG
TTGAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGT
GGTTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGA
TGTAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGC
TCCGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACC
CTAAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCA
TCTCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCAC
TGTGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATA
AGGGAGCTGCAGGGTGCAATCTCAAAGTTTCTTTAACAACAGCT
back to top