CB304990

Overview
NameCB304990
Unique NameCB304990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11430 contig Csv1_Contig11430:1404..2047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C98A3_ARATH (Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.333e-24
Identity = 52/117 (44.44%), Postives = 70/117 (59.83%), Query Frame = -2
Query:  236 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK----LDNHNMDMEDKFGLTVQKAQPLHAV 574
            DV+I G+ +PKG+ V VNVWA+ RD + W NP  F PERFL  + D KG +F L+PFGAGRR+CPG  L I ++  M+  L++ F W          +DM +  GL      P+ AV
Sbjct:  375 DVKIGGYDIPKGSNVHVNVWAVARDPAVWKNPFEFRPERFLEEDVDMKGHDFRLLPFGAGRRVCPGAQLGINLVTSMMSHLLHHFVWTPPQGTKPEEIDMSENPGLVTYMRTPVQAV 491          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71C1_MAIZE (Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.333e-24
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = -2
Query:  233 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL----GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL------DNHNMDMEDKFGLTVQKAQPLHAVP 574
            D EI G+T+P G +V VN WA+ RD + WD    F PERFL     +  D  G++   +PFGAGRRIC G   AI  + +ML +LI  FDW++          +DM D+FG+T+++ Q L+ VP
Sbjct:  403 DCEINGYTIPAGTRVIVNAWALARDPTCWDKAEEFFPERFLEQGRDAEVDMYGKDIRFVPFGAGRRICAGATFAIATVEIMLANLIYHFDWEMPAEMERTGAKVDMSDQFGMTLRRTQKLYLVP 526          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71B5_ARATH (Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CYP71B5 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.333e-24
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = -2
Query:  233 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDN----HNMDMEDKFGLTVQKAQPLHAVP 574
            D+ I G+++PK   + +N + IGRD   W  P  FIPERF+ +  ++KGQ+FEL+PFGAGRR+CPG+   I ++ L L SL+  FDW L N     ++DME+     + K   L  VP
Sbjct:  376 DINIQGYSIPKNTMIQINTYTIGRDPKNWTKPDEFIPERFVDNPIEYKGQHFELLPFGAGRRVCPGMATGITIVELGLLSLLYFFDWSLPNGMTTKDIDMEEDGAFVIAKKVSLELVP 493          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71DI_MENSP (Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.354e-24
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  233 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL----DNHNMDMEDKFGLTVQKAQPLHAVP 574
            + E+ G+T+P   ++F+NVWAIGRD   W++P TF PERF   + DF G +FE IPFGAGRRICPGL   +  + + L  L+  FDWKL     + ++DM +  GL+  K + +  VP
Sbjct:  373 ECEVNGYTIPAKTRIFINVWAIGRDPQYWEDPDTFRPERFDEVSRDFMGNDFEFIPFGAGRRICPGLHFGLANVEIPLAQLLYHFDWKLPQGMTDADLDMTETPGLSGPKKKNVCLVP 490          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71DI_MENGR (Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.354e-24
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  233 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL----DNHNMDMEDKFGLTVQKAQPLHAVP 574
            + E+ G+T+P   ++F+NVWAIGRD   W++P TF PERF   + DF G +FE IPFGAGRRICPGL   +  + + L  L+  FDWKL     + ++DM +  GL+  K + +  VP
Sbjct:  373 ECEVNGYTIPAKTRIFINVWAIGRDPQYWEDPDTFRPERFDEVSRDFMGNDFEFIPFGAGRRICPGLHFGLANVEIPLAQLLYHFDWKLPQGMTDADLDMTETPGLSGPKKKNVCLVP 490          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71BN_ARATH (Cytochrome P450 71B23 OS=Arabidopsis thaliana GN=CYP71B23 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.354e-24
Identity = 51/117 (43.59%), Postives = 77/117 (65.81%), Query Frame = -2
Query:  233 VEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDN----HNMDMEDKFGLTVQKAQPLHAVP 571
            ++I G+ +P+  Q+ VNV+AIGRD   W+NP  F PERF+ S+ D++G NFEL+PFG+GRRICPG+ + I  + L L +L+  FDW L       ++D+E++  + + K   L  VP
Sbjct:  381 IKIQGYDIPEKTQIMVNVYAIGRDPDLWENPEEFKPERFVDSSVDYRGLNFELLPFGSGRRICPGMTMGIATVELGLLNLLYFFDWGLPEGRTVKDIDLEEEGAIIIGKKVSLELVP 497          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71B3_ARATH (Cytochrome P450 71B3 OS=Arabidopsis thaliana GN=CYP71B3 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.354e-24
Identity = 49/116 (42.24%), Postives = 76/116 (65.52%), Query Frame = -2
Query:  233 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTVQKAQPLHAVP 574
            D++I G+ +P+   + VN W+IGR+   W+NP  F PERF+    D+KG +FE++PFG+GR+ICPG+   I  + L L +L+  FDW+L  ++ ++DME+    T+ K  PL  VP
Sbjct:  382 DIKIQGYDIPRKTILLVNAWSIGRNPELWENPEEFNPERFIDCPMDYKGNSFEMLPFGSGRKICPGIAFGIATVELGLLNLLYYFDWRLAEEDKDIDMEEAGDATIVKKVPLELVP 497          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71D8_SOYBN (Cytochrome P450 71D8 OS=Glycine max GN=CYP71D8 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 51/115 (44.35%), Postives = 72/115 (62.61%), Query Frame = -2
Query:  233 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDN----HNMDMEDKFGLTVQKAQPLHAVP 565
            I G+ +P   +V +N WAIGRD   W +   FIPERF  S+ DFKG +FE IPFGAGRR+CPG+   +  + L L  L+  F+W+L N     ++DM++ FG+TV +   L  +P
Sbjct:  384 IDGYEIPIKTKVMINTWAIGRDPQYWSDADRFIPERFNDSSIDFKGNSFEYIPFGAGRRMCPGMTFGLASITLPLALLLYHFNWELPNKMKPEDLDMDEHFGMTVARKNKLFLIP 498          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71BH_ARATH (Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=CYP71B17 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = -2
Query:  233 VEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL----DNHNMDMEDKFGLTVQKAQPLHAVP 571
            V++ G+ +P   ++ VN WAIGRD   W +P  F PERF+ S  D++GQ+FEL+PFG+GRRICPG+ + +  L L L +L+  FDWKL     + ++D E+   LTV K   L  VP
Sbjct:  382 VKVQGYDIPPKRRILVNAWAIGRDPKLWTDPEEFKPERFIDSPVDYRGQHFELLPFGSGRRICPGMAMGMATLELGLLNLLYFFDWKLPDGMSHKDIDTEEAGTLTVVKKVHLKLVP 498          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71B9_ARATH (Cytochrome P450 71B9 OS=Arabidopsis thaliana GN=CYP71B9 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  233 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDN----HNMDMEDKFGLTVQKAQPLHAVP 574
            + EI G+ +     ++VNVWAIGRD  +W +   F PERF+ +N D KGQNFEL+PFG+GRRICPG+ +   M+   L +++  FDW++ +     ++DME+  GL V K   L  VP
Sbjct:  377 EFEINGYKIQPKTLLYVNVWAIGRDPDSWKDADMFYPERFMDNNIDAKGQNFELLPFGSGRRICPGMYMGTTMVEFGLANMLYQFDWEVPDGMVVEDIDMEESPGLAVGKKNELLLVP 494          
The following BLAST results are available for this feature:
BLAST of CB304990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
C98A3_ARATH3.333e-2444.44Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CY... [more]
C71C1_MAIZE3.333e-2442.74Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 S... [more]
C71B5_ARATH3.333e-2443.22Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CY... [more]
C71DI_MENSP4.354e-2444.92Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D1... [more]
C71DI_MENGR4.354e-2444.92Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D... [more]
C71BN_ARATH4.354e-2443.59Cytochrome P450 71B23 OS=Arabidopsis thaliana GN=C... [more]
C71B3_ARATH4.354e-2442.24Cytochrome P450 71B3 OS=Arabidopsis thaliana GN=CY... [more]
C71D8_SOYBN5.686e-2444.35Cytochrome P450 71D8 OS=Glycine max GN=CYP71D8 PE=... [more]
C71BH_ARATH5.686e-2445.30Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=C... [more]
C71B9_ARATH5.686e-2444.07Cytochrome P450 71B9 OS=Arabidopsis thaliana GN=CY... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_C08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_C08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304990 ID=CB304990; Name=CB304990; organism=Citrus sinensis; type=EST; length=644bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATGCTATTAAATCGCATGA
CTTTATAGTTTATTGAAGATTAACTCCGTTAAGTTGCGTGTCTACATAAA
AAAAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTA
ACCACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGG
CTACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGG
TTGAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGT
GGTTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGA
TGTAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGC
TCCGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACC
CTAAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCA
TCTCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCAC
TGTGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATA
AGGGAGCTGCAGGGTGCAATCTCAAAGTTTCTTTAACAACAGCT
back to top