CB304990

Overview
NameCB304990
Unique NameCB304990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11430 contig Csv1_Contig11430:1404..2047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71DB_LOTJA (Cytochrome P450 71D11 (Fragment) OS=Lotus japonicus GN=CYP71D11 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  233 EIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL----DNHNMDMEDKFGLTVQKAQPLHAVP 568
            EI G+ +P  + V VN +AIG D   W  P  F PERF+ S+ D+KG NFE +PFGAGRRICPG+   +  + L+L  L+  FDW L     N ++D+ ++FG+TV K + L  +P
Sbjct:  366 EINGYHIPAKSTVLVNTFAIGTDSKYWAEPERFCPERFIDSSIDYKGTNFEHLPFGAGRRICPGINYGMANVELVLALLLYHFDWTLPKGIKNEDLDLTEEFGVTVSKKEDLCLIP 481          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71AM_ARATH (Cytochrome P450 71A22 OS=Arabidopsis thaliana GN=CYP71A22 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24
Identity = 52/141 (36.88%), Postives = 82/141 (58.16%), Query Frame = -2
Query:  236 AVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWD-NPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMD----MEDKFGLTVQKAQPLHAV 643
            AV+KE                 +DV +  + +P G QV +N WAIGR+ +TW  +   F PER L S+ DF+G NFELIPFGAGRRICP +  A+ ++ + L +L++ +DW+L    ++    + +  G+ + +  PL+A+
Sbjct:  345 AVIKETMRLHPPLPLMVPHESTQDVRLGDYHIPAGTQVMINAWAIGREAATWGPDAEKFRPERHLNSSVDFRGHNFELIPFGAGRRICPAISFAVILIEVTLANLVHRYDWRLPEEYIEDQTNVAESTGMVIHRLFPLYAI 485          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71BX_ARATH (Cytochrome P450 71B36 OS=Arabidopsis thaliana GN=CYP71B36 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.699e-24
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  233 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD----NHNMDMEDKFGLTVQKAQPLHAVP 574
            + E+  + +P   +++VNVWAIGRD  TW +P  F+PERF+ S+ D KGQ+FEL+PFG+GRR+CP + +   M+   L +++  FDWK+       ++D+E+  GL   K   L  VP
Sbjct:  377 EFELNDYVIPVKTRLYVNVWAIGRDPDTWKDPEEFLPERFVNSSIDAKGQHFELLPFGSGRRMCPAMYMGTTMVEFGLANMLYHFDWKIPVGMVAEDIDLEESPGLNASKKNELVLVP 494          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71BP_ARATH (Cytochrome P450 71B25 OS=Arabidopsis thaliana GN=CYP71B25 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.699e-24
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = -2
Query:  233 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTVQKAQPLHAVP 574
            D++I G+ +P+   + V+ W++GRD   W NP  F PERF+    D+KG +FE +PFG+GRR CPG+  AI  + L L +L+  FDWKL  +  +M+ME+   +T+ K  PL  +P
Sbjct:  382 DIKIQGYDIPRKTLLLVSAWSLGRDPKYWKNPEEFNPERFIDCPVDYKGHSFEFLPFGSGRRFCPGMASAIATIELTLLNLLYFFDWKLPEEMKDMNMEESGDVTIVKKVPLELLP 497          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C93A1_SOYBN (Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = -2
Query:  233 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL--GSN-ADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTVQKAQPLHAVP 565
            + G+ +P   ++FVNVWAIGRD + W+ P  F PERF+  G N  D +GQ++  IPFG+GRR CPG  LA +++ + L  +I  F WKL   N  +DME+K G+T+ +A P+  VP
Sbjct:  384 VCGYDIPAKTRLFVNVWAIGRDPNHWEKPFEFRPERFIRDGQNQLDVRGQHYHFIPFGSGRRTCPGASLAWQVVPVNLAIIIQCFQWKLVGGNGKVDMEEKSGITLPRANPIICVP 499          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C83A1_ARATH (Cytochrome P450 83A1 OS=Arabidopsis thaliana GN=CYP83A1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = -2
Query:  233 AVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWD-NPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDN----HNMDMEDKFGLTVQKAQPLHAVP 643
            A+VKE                 +D +IAG+ +P G  V VN WA+ RDE  W  NP  F PERFL    DFKG ++E IPFG+GRR+CPG+ L   ML +   +L+ SF++KL N     +++M+   GL + K+Q L  VP
Sbjct:  355 ALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLSFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVP 496          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71A2_SOLME (Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71A2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.654e-23
Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = -2
Query:  236 DVEIAGFT-VPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDN----HNMDMEDKFGLTVQKAQPLHAV 574
            DV + G+  +P   Q  +N WAIGRD  +W+NP  + PERFL S+AD KG NF+L+PFGAGRR CPG   AI ++ L L  L++ FD+ L       ++DM +  G+T ++  PL  V
Sbjct:  384 DVNLLGYYHIPARTQAIINAWAIGRDPLSWENPEEYQPERFLNSDADVKGLNFKLLPFGAGRRGCPGSSFAIAVIELALARLVHKFDFALPEGIKPEDLDMTETIGITTRRKLPLLVV 501          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71C3_MAIZE (Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = -2
Query:  227 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD----FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMD------MEDKFGLTVQKAQPLHAVPGA 574
            D +I G+ +P   +V VN WAIGRD + W+ P  F+PERF+    D    + GQ+F  +PFG+GRRICPG    +  + +ML +L+  FDW++ N   D      M++KFGL +++ + L+ VP A
Sbjct:  408 DCQIDGYHIPANPRVLVNGWAIGRDPAVWEKPEEFMPERFMRDGWDKSNSYSGQDFRYLPFGSGRRICPGANFGLATMEIMLANLMYHFDWEVPNEKEDGCWKVSMDEKFGLMLRRNELLYLVPRA 533          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C98A2_SOYBN (Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 50/117 (42.74%), Postives = 71/117 (60.68%), Query Frame = -2
Query:  236 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK----LDNHNMDMEDKFGLTVQKAQPLHAV 574
            +V++ G+ +PKG+ V VNVWA+ RD + W +P  F PERFL  + D KG +F L+PFG+GRR+CPG  L I +   MLG L++ F W     +    +DM +  GL      P+ AV
Sbjct:  376 NVKVGGYDIPKGSNVHVNVWAVARDPAVWKDPLEFRPERFLEEDVDMKGHDFRLLPFGSGRRVCPGAQLGINLAASMLGHLLHHFCWTPPEGMKPEEIDMGENPGLVTYMRTPIQAV 492          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C71AL_ARATH (Cytochrome P450 71A21 OS=Arabidopsis thaliana GN=CYP71A21 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.686e-23
Identity = 51/141 (36.17%), Postives = 81/141 (57.45%), Query Frame = -2
Query:  236 AVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWD-NPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL----DNHNMDMEDKFGLTVQKAQPLHAV 643
            AV+KE                 +DV +  + +P G QV +N WAIGR+ +TW  +   F PER L S+ DF+G NFEL+PFGAGRRICP +  A+ ++ + L + ++ +DWKL      +  ++ +  G+ + +  PL+A+
Sbjct:  345 AVIKETTRLHPPLPLLAPHESIQDVILGDYHIPAGTQVMINAWAIGREAATWGPDAEKFRPERHLDSSVDFRGHNFELVPFGAGRRICPAISFAVVLIEVALANFVHRYDWKLPEDSKENQTNVAESTGMVIHRLFPLYAI 485          
The following BLAST results are available for this feature:
BLAST of CB304990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
C71DB_LOTJA7.426e-2444.83Cytochrome P450 71D11 (Fragment) OS=Lotus japonicu... [more]
C71AM_ARATH7.426e-2436.88Cytochrome P450 71A22 OS=Arabidopsis thaliana GN=C... [more]
C71BX_ARATH9.699e-2441.53Cytochrome P450 71B36 OS=Arabidopsis thaliana GN=C... [more]
C71BP_ARATH9.699e-2442.24Cytochrome P450 71B25 OS=Arabidopsis thaliana GN=C... [more]
C93A1_SOYBN1.267e-2345.69Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=... [more]
C83A1_ARATH1.267e-2341.55Cytochrome P450 83A1 OS=Arabidopsis thaliana GN=CY... [more]
C71A2_SOLME1.654e-2344.92Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71... [more]
C71C3_MAIZE2.161e-2340.48Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 S... [more]
C98A2_SOYBN2.822e-2342.74Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=... [more]
C71AL_ARATH3.686e-2336.17Cytochrome P450 71A21 OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_C08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_C08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304990 ID=CB304990; Name=CB304990; organism=Citrus sinensis; type=EST; length=644bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATGCTATTAAATCGCATGA
CTTTATAGTTTATTGAAGATTAACTCCGTTAAGTTGCGTGTCTACATAAA
AAAAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTA
ACCACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGG
CTACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGG
TTGAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGT
GGTTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGA
TGTAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGC
TCCGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACC
CTAAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCA
TCTCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCAC
TGTGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATA
AGGGAGCTGCAGGGTGCAATCTCAAAGTTTCTTTAACAACAGCT
back to top