CB304997

Overview
NameCB304997
Unique NameCB304997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13078 contig Csv1_Contig13078:276..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_HUMAN (60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.030e-48
Identity = 91/132 (68.94%), Postives = 111/132 (84.09%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:   33 GPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_BOVIN (60S ribosomal protein L12 OS=Bos taurus GN=RPL12 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.030e-48
Identity = 91/132 (68.94%), Postives = 111/132 (84.09%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:   33 GPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_CHILA (60S ribosomal protein L12 OS=Chinchilla lanigera GN=RPL12 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.497e-47
Identity = 90/132 (68.18%), Postives = 111/132 (84.09%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VD + P D+  +I +G VE P
Sbjct:   33 GPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINNGVVECP 163          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_NEUCR (60S ribosomal protein L12 OS=Neurospora crassa GN=rpl-12 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.049e-45
Identity = 87/132 (65.91%), Postives = 111/132 (84.09%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKK+GEDIAK T  DWKGLRVTVKLT+QNRQA V+VVP+A+ALVI+ALKEP RDRKK KNIKHN +++ D+++EIA+ MR +S +K+L GTV E+LGT  SVGC VDGK P+ +Q+ I  G++++P
Sbjct:   33 GPLGLSPKKVGEDIAKATG-DWKGLRVTVKLTIQNRQAAVSVVPTASALVIRALKEPPRDRKKEKNIKHNKSVSFDEIVEIARTMRFKSFSKELKGTVLEVLGTAFSVGCQVDGKSPKAVQEAIHAGEIDVP 163          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_DICDI (60S ribosomal protein L12 OS=Dictyostelium discoideum GN=rpl12 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 84/131 (64.12%), Postives = 106/131 (80.92%), Query Frame = -1
Query:  144 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEI 536
            GPLG+SPKK+G+DIAK T + WKG++V+VKLT+QNR A   V+PSA+ALVIKALKEP RDRKK KNIKHNGNI L+++ +IAK MR +S+A D  G+V EILGT  SVGC V+GK PRD+Q  I  G++E+
Sbjct:   33 GPLGVSPKKVGDDIAKAT-QPWKGMKVSVKLTIQNRIAVPEVLPSASALVIKALKEPPRDRKKEKNIKHNGNIPLEEICKIAKTMRFKSLAVDFKGSVLEILGTAHSVGCKVNGKSPRDIQAGIQSGEIEV 162          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_YEAST (60S ribosomal protein L12 OS=Saccharomyces cerevisiae GN=RPL12A PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.047e-41
Identity = 83/132 (62.88%), Postives = 106/132 (80.30%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKK+GEDIAK T K++KG++VTV+L +QNRQA  +VVPSA++LVI ALKEP RDRKK KN+KH+GNI LD++IEIA+ MR +S  + L+   KEILGT  SVGC VD K+P D+ + I  G++EIP
Sbjct:   33 GPLGLSPKKVGEDIAKAT-KEFKGIKVTVQLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEIP 163          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_ENCCU (60S ribosomal protein L12 OS=Encephalitozoon cuniculi GN=RPL12 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.417e-36
Identity = 74/133 (55.64%), Postives = 103/133 (77.44%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMR-PRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLS K +GEDI K TA D+K L+V V+L +++R+A V V PS A L+IK+LKEP RDRKK KNI HNG++ + +V++IA++ R  RS +  LSGTVKE+LGTC S+GC VDGK P+++ +EI  G++++P
Sbjct:   33 GPLGLSSKVVGEDIKKATA-DYKSLKVHVQLAIKDRKATVEVQPSVATLIIKSLKEPPRDRKKEKNILHNGSLRMTEVVDIARIARSSRSYSNSLSGTVKEVLGTCKSIGCKVDGKCPKEVTREIDAGEIKLP 164          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_THEON (50S ribosomal protein L11P OS=Thermococcus onnurineus (strain NA1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.435e-18
Identity = 53/133 (39.85%), Postives = 84/133 (63.16%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLGL+ K++ ++I K T KD++G++V VK+ V++ + K       VP  + L+ K L  P    K +    H+  GN+T++ VI IAK    + +A DL    KE++GT +S+G TV+GKDPR++Q+EI +G
Sbjct:   25 GPLGLNVKQVVDEINKAT-KDFEGMQVPVKIIVEDPKKKTFRIEVGVPPVSQLIKKELGIP----KGSSEAGHSPVGNLTMEQVIRIAKAKMDQMLAADLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_THEAC (50S ribosomal protein L11P OS=Thermoplasma acidophilum GN=rpl11p PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.153e-18
Identity = 50/135 (37.04%), Postives = 84/135 (62.22%), Query Frame = -1
Query:  144 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEI 536
            GPLGL+  ++ ++I ++T K+++G+RV V +TV + + K       +P  +AL+ K L   +   K+ + I   GN TLD ++++AK      +A DL     E+LGTCVS+G  VDGKDP+++Q++I  G++ I
Sbjct:   25 GPLGLNVAQVVKEINEKT-KEFQGMRVPVTITVVDPETKKYEITVGIPPTSALLKKKLGIEKGAAKRKEAIA--GNATLDQIVDVAKTKMASMLASDLKAATLEVLGTCVSMGINVDGKDPKEVQRQIKAGEISI 156          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_ARCFU (50S ribosomal protein L11P OS=Archaeoglobus fulgidus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.253e-18
Identity = 51/134 (38.06%), Postives = 86/134 (64.18%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN-RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGL+ K++ + I  E  KD++GL V VK+ V++ R  ++ V +P  +AL+ + L   +      + +   GN+T++ ++ IA++ R +S++  L   VKE+LGTC S+G TV+GK P++L + I +G VEIP
Sbjct:   25 GPLGLNVKQVVDKI-NEATKDYEGLSVPVKIIVKDDRSFEIEVGIPPVSALIKRELGIEKGASNPGREVV--GNLTMEQLLNIARIKRQQSLSYTLKEVVKEVLGTCNSMGITVEGKSPKELTRMIEEGQVEIP 155          
The following BLAST results are available for this feature:
BLAST of CB304997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL12_HUMAN5.030e-4868.9460S ribosomal protein L12 OS=Homo sapiens GN=RPL12... [more]
RL12_BOVIN5.030e-4868.9460S ribosomal protein L12 OS=Bos taurus GN=RPL12 P... [more]
RL12_CHILA2.497e-4768.1860S ribosomal protein L12 OS=Chinchilla lanigera G... [more]
RL12_NEUCR1.049e-4565.9160S ribosomal protein L12 OS=Neurospora crassa GN=... [more]
RL12_DICDI7.036e-4264.1260S ribosomal protein L12 OS=Dictyostelium discoid... [more]
RL12_YEAST2.047e-4162.8860S ribosomal protein L12 OS=Saccharomyces cerevis... [more]
RL12_ENCCU4.417e-3655.6460S ribosomal protein L12 OS=Encephalitozoon cunic... [more]
RL11_THEON2.435e-1839.8550S ribosomal protein L11P OS=Thermococcus onnurin... [more]
RL11_THEAC4.153e-1837.0450S ribosomal protein L11P OS=Thermoplasma acidoph... [more]
RL11_ARCFU9.253e-1838.0650S ribosomal protein L11P OS=Archaeoglobus fulgid... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304997 ID=CB304997; Name=CB304997; organism=Citrus sinensis; type=EST; length=539bp
TTTTTTTTTTTTTTTTTTTTTTTTTNNNNTACTGTAAAGATCCAAAACTG
ATAATTAAAAAAAAGGCACTGATATATAGAGATAAAAACAAAAATTAAAA
TCTAAAATAGACCCCCTCACAAACAGAGTCTTCAATCAAGAGGAATTTCG
ACATCACCATCAGTGATCTCCTGCTGCAGGTCCCTAGGGTCCTTGCCATC
GACCGTACACCCAACAGAAACGCATGTGCCCAAAATCTCCTTAACGGTGC
CACTCAAATCCTTAGCCATCGACCTGGGCCGCATCACTTTTGCGATTTCG
ATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTGATGTTCTTGGTCTT
CTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAATCACCAGGGCGGCGG
CGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCTGGACGGTGAGCTTG
ACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGATGTC
CTCTCCGATTTTCTTTGGGGAGAGACCGAGGGGACCGCC
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