CB304997

Overview
NameCB304997
Unique NameCB304997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13078 contig Csv1_Contig13078:276..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_PYRFU (50S ribosomal protein L11P OS=Pyrococcus furiosus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.516e-17
Identity = 53/132 (40.15%), Postives = 84/132 (63.64%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLGL+ K++ + I  E  KD+ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IAK+ + + +A  L    KE++GT +S+G TV+GKDPR++Q+EI +G
Sbjct:   26 GPLGLNVKQVVDKI-NEATKDFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_PYRKO (50S ribosomal protein L11P OS=Pyrococcus kodakaraensis GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.592e-17
Identity = 50/133 (37.59%), Postives = 85/133 (63.91%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLGL+ K++ ++I K T K+++G++V VK+ V++ + K       +P  + L+ K L  P    K +    H   GN+T++ VI+IAK+   + +A +L    KE++GT +S+G TV+GKDPR++Q+EI +G
Sbjct:   25 GPLGLNVKQVVDEINKAT-KEFEGMQVPVKIIVEDPKKKTFRIEVGIPPTSQLIKKELGIP----KGSSEAGHTPAGNLTMEQVIKIAKMKIDQMLAPNLKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_PYRAB (50S ribosomal protein L11P OS=Pyrococcus abyssi GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.998e-17
Identity = 53/132 (40.15%), Postives = 84/132 (63.64%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLGL+ K++ + I  E  K++ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IAK+ R + +A  L    KE++GT +S+G TV+GKDPR++Q+EI +G
Sbjct:   26 GPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKRNQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_THEGJ (50S ribosomal protein L11P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.745e-16
Identity = 48/131 (36.64%), Postives = 84/131 (64.12%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLGL+ K++ ++I K T K+++G++V VK+ V++ + K       +P  + L+ K L  P+   +   +    GN+T++ VI+IAK+   + +A  L    KE++GT +S+G TV+GKDPR++Q+EI +G
Sbjct:   25 GPLGLNVKQVVDEINKAT-KEFEGMQVPVKIIVEDPKKKTFRIEVGIPPTSQLIKKELGIPKGSSEPVHSPV--GNLTMEQVIKIAKMKIDQMLAPTLKAASKEVIGTALSMGVTVEGKDPREVQREIDEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_PYRHO (50S ribosomal protein L11P OS=Pyrococcus horikoshii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.745e-16
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLGL+ K++ + I  E  K++ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IAK+ R + +A  L    KE++GT +S+G TV+GKDPR +Q+EI +G
Sbjct:   26 GPLGLNVKQVVDKI-NEATKEFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKRSQMLALTLKAAAKEVIGTALSMGVTVEGKDPRIVQREIDEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METJA (50S ribosomal protein L11P OS=Methanocaldococcus jannaschii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.279e-16
Identity = 48/130 (36.92%), Postives = 80/130 (61.54%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++  ++ ++I ++T KD++G++V VK+ V     K  +   +P   AL+ K L       +    +   GN+TL+ VI+IAK+ +   ++  L   VKE+LGTC S+G TV+GKDP+++Q+EI  G
Sbjct:   26 GPLGVNVMQVVKEINEKT-KDYEGMQVPVKVIVDTETRKFEIEVGIPPTTALIKKELGIETAAHEPRHEVV--GNLTLEQVIKIAKMKKDAMLSYTLKNAVKEVLGTCGSMGVTVEGKDPKEVQKEIDAG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_THEVO (50S ribosomal protein L11P OS=Thermoplasma volcanium GN=rpl11p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 49/135 (36.30%), Postives = 83/135 (61.48%), Query Frame = -1
Query:  144 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEI 536
            GPLGL+  ++ ++I ++T K+++G++V V +TV + + K       VP  +AL+ K L   +   KK + +   GN TL+ +  +A    P  +AKDL   V E+LGTCV++G  V+GKDP+++Q+ I  G ++I
Sbjct:   25 GPLGLNVAQVVKEINEKT-KEFQGMQVPVTVTVIDPETKKYEITVGVPPTSALLKKELGLEKGASKKKEAVA--GNATLEQIKNVAIKKMPSMLAKDLKSAVLEVLGTCVAMGINVEGKDPKEVQKLIKSGQIKI 156          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METKA (50S ribosomal protein L11P OS=Methanopyrus kandleri GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 47/129 (36.43%), Postives = 86/129 (66.67%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV--QNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++ +++ E+I ++T KD+KG+ V VK+ V  + R+ +V V     + +IK+    ++   + ++ +  G+++++ VI+IAK+     ++ DL    KEILGTC S+G TV+GKDP+++Q+EI +G
Sbjct:   26 GPLGVNIQEVVEEINRKT-KDFKGMEVPVKIIVDTETREFEVKVGSPPTSAIIKSELGIDKGAHEPRH-ETVGDLSMEQVIKIAKMKFDDLLSYDLKTAAKEILGTCGSMGVTVEGKDPKEVQKEIDEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_PICTO (50S ribosomal protein L11P OS=Picrophilus torridus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.613e-15
Identity = 48/135 (35.56%), Postives = 85/135 (62.96%), Query Frame = -1
Query:  144 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEI 536
            GPLGL+  ++ +DI ++T K++ G++V V + V +   K    +  VP  +AL+ K L   +   KK + I   GN TL+ + ++A+  R   ++ ++ G V E+LG+ VS+G TVDG+DP+++Q+ I +G++EI
Sbjct:   24 GPLGLNLGQVVKDINEKT-KNFAGMQVPVTVNVIDPATKKYEIIVGVPPTSALLKKELGIEKGASKKKEKIA--GNATLEQIKKVAESKRSALLSYNMKGAVLEVLGSAVSLGITVDGRDPKEVQKMIKNGEIEI 155          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METTH (50S ribosomal protein L11P OS=Methanobacterium thermoautotrophicum GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.613e-15
Identity = 47/130 (36.15%), Postives = 82/130 (63.08%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN--RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++  ++ E+I ++TA D++G++V VK+ V    R  +V V  P   AL++  LK  +  +     +    +I+++ V++IA++     ++ D    VKEI+GTCVS+G TV+GKDPR++Q+E+  G
Sbjct:   26 GPLGINMMQVVEEINRKTA-DFEGMKVPVKIIVDTDTRDFEVEVGTPPTTALIMDELKLEKGSQDP--GMDKIADISMEQVLKIARMKFDALLSNDYKRAVKEIMGTCVSMGITVNGKDPREVQREVDQG 152          
The following BLAST results are available for this feature:
BLAST of CB304997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL11_PYRFU3.516e-1740.1550S ribosomal protein L11P OS=Pyrococcus furiosus ... [more]
RL11_PYRKO4.592e-1737.5950S ribosomal protein L11P OS=Pyrococcus kodakarae... [more]
RL11_PYRAB5.998e-1740.1550S ribosomal protein L11P OS=Pyrococcus abyssi GN... [more]
RL11_THEGJ1.745e-1636.6450S ribosomal protein L11P OS=Thermococcus gammato... [more]
RL11_PYRHO1.745e-1640.1550S ribosomal protein L11P OS=Pyrococcus horikoshi... [more]
RL11_METJA2.279e-1636.9250S ribosomal protein L11P OS=Methanocaldococcus j... [more]
RL11_THEVO6.631e-1636.3050S ribosomal protein L11P OS=Thermoplasma volcani... [more]
RL11_METKA1.477e-1536.4350S ribosomal protein L11P OS=Methanopyrus kandler... [more]
RL11_PICTO5.613e-1535.5650S ribosomal protein L11P OS=Picrophilus torridus... [more]
RL11_METTH5.613e-1536.1550S ribosomal protein L11P OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304997 ID=CB304997; Name=CB304997; organism=Citrus sinensis; type=EST; length=539bp
TTTTTTTTTTTTTTTTTTTTTTTTTNNNNTACTGTAAAGATCCAAAACTG
ATAATTAAAAAAAAGGCACTGATATATAGAGATAAAAACAAAAATTAAAA
TCTAAAATAGACCCCCTCACAAACAGAGTCTTCAATCAAGAGGAATTTCG
ACATCACCATCAGTGATCTCCTGCTGCAGGTCCCTAGGGTCCTTGCCATC
GACCGTACACCCAACAGAAACGCATGTGCCCAAAATCTCCTTAACGGTGC
CACTCAAATCCTTAGCCATCGACCTGGGCCGCATCACTTTTGCGATTTCG
ATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTGATGTTCTTGGTCTT
CTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAATCACCAGGGCGGCGG
CGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCTGGACGGTGAGCTTG
ACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGATGTC
CTCTCCGATTTTCTTTGGGGAGAGACCGAGGGGACCGCC
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