CB304997

Overview
NameCB304997
Unique NameCB304997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13078 contig Csv1_Contig13078:276..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METVS (50S ribosomal protein L11P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.133e-14
Identity = 44/133 (33.08%), Postives = 79/133 (59.40%), Query Frame = -1
Query:  147 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 536
            GPLG++  ++ + I  +T KD++G+ V VK+ V+  +    V   +P A+AL+ K L      ++    +   GNIT++ +++IAK+ +   +A  L    KE++GTCVSVG  V+GK P++ Q+ +  G+ +
Sbjct:   26 GPLGVNIMQVVQMINTKT-KDYEGMSVPVKVIVETTKRTFEVEVGIPPASALIKKELGLESGSQEPKHKVA--GNITMEKIVKIAKMKQDAMLAYTLKSAAKEVIGTCVSVGVNVEGKTPKEAQKAVDAGEFD 155          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METHJ (50S ribosomal protein L11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.133e-14
Identity = 45/130 (34.62%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ---AKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++ K + ++I K+TA  + G++V V++ V  ++     V + P+ A ++ +A  E       TK +   G++ L+  + IAK+     ++ DL   VKE++GTCVS+G TV GK P+D+ +EI  G
Sbjct:   25 GPLGINVKAVVDEINKKTAS-FNGMQVPVRVEVDEKKNFTISVGIPPTTALIMKEAGVEKGSGEPNTKIV---GDVPLEAAVTIAKMKLDDMLSYDLKNAVKEVVGTCVSLGITVSGKKPKDMLKEIDSG 150          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METMJ (50S ribosomal protein L11P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.786e-14
Identity = 46/132 (34.85%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  147 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV--PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 536
            GPLG++ K + +DI K+TA ++ G++V V +TV +++     V  P   ALV+K     +   +    +   G++ L+  + IA++     ++ DL   VKE+LGTCVSVG TV+GK PR++ Q + +G+ +
Sbjct:   25 GPLGINVKAVVDDINKKTA-EFNGMQVPVTVTVDDKKNFTIEVGIPPTTALVMKEAGITKGSTEPGALVA--GDLPLEAAVRIARMKFDGMLSYDLKSAVKEVLGTCVSVGVTVEGKKPREMIQAVNNGEYD 153          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_KORCO (50S ribosomal protein L11P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.639e-14
Identity = 44/130 (33.85%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            G LGL+  +I ++I ++T+  + G+RV V++ V     K  +    P  + L+++ LK  +     +K I   GN+ ++ V+ IAK+    S   +L   VK++LGT +S+G TV+GKDPR++Q+E+  G
Sbjct:   26 GGLGLNMGQIVKEINEKTSS-YSGMRVPVEIEVDTETKKFEIRVGTPPTSMLILRELKAEKGSSDASKKI---GNLKMETVVNIAKMKLASSNTPELKQVVKQVLGTALSMGVTVEGKDPREVQREVDSG 151          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_UNCMA (50S ribosomal protein L11P OS=Uncultured methanogenic archaeon RC-I GN=rpl11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.752e-14
Identity = 46/129 (35.66%), Postives = 76/129 (58.91%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++ KK+ ++I  +T KD+ G+ V VK+ V  +R   V V  P  +ALV+  LK  +     T N    G++T++  I++A++ R   ++  L   VKE+ GTCVS+G  ++GK P++   E+  G
Sbjct:   25 GPLGINIKKVVDEINNKT-KDYNGMTVPVKVIVDASRNFTVEVGTPPTSALVLSELKLEKGSG--TPNTNFIGSLTIEQAIKVAQMKRDAMLSYTLKNAVKEVAGTCVSLGVMIEGKKPKEFIAEVNAG 150          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_HYPBU (50S ribosomal protein L11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.106e-14
Identity = 49/130 (37.69%), Postives = 71/130 (54.62%), Query Frame = -1
Query:  156 LGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV---PSAAALVIKAL--KEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 530
            LGL   K+ EDI K T K +KG  V VKL V     +  +    P+   L++KA+   EP  D    K     G++  + ++EIA + +P   AK L   VK ILG+  S+G TVDGKDP+ + +E+ +G
Sbjct:   28 LGLDVNKVVEDINKATEK-YKGFEVAVKLIVDENTKEYEIEVKPPTTTELLLKAVGASEPSGDPMHQKI----GDLPFEKIVEIAILKKPSLNAKTLKAAVKTILGSARSIGITVDGKDPKQVTKEVEEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METS5 (50S ribosomal protein L11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.059e-13
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = -1
Query:  156 LGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 530
            LGL+   +GE + K  E    +KG+ V V L V     K  V   VP+  +L++K      P  D +  K     GNI++DDVIE+A   +P   AK+L G VK ILGT  S+G TVD KDP+ + +E+ +G
Sbjct:   28 LGLN---VGEVVKKINEATSQFKGMTVPVTLDVDTDTKKYEVSVGVPTTTSLLVKKAGASGPSGDPEHKKI----GNISMDDVIEVAISKKPSLTAKELKGAVKSILGTAKSIGLTVDNKDPKLVVREVEEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METPE (50S ribosomal protein L11P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.059e-13
Identity = 45/136 (33.09%), Postives = 83/136 (61.03%), Query Frame = -1
Query:  135 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIPLD 536
            GPLG++ K + +DI K+TA ++ G++V VK+ V +++   ++V +P   ALV+K +   +   +    I   G++ ++  + IA++     ++ +L   VKE++GTCVSVG TVDGK P+++   I+ G  +  L+
Sbjct:   25 GPLGINVKAVVDDINKKTA-EFNGMQVPVKIEVDDKKNVTISVGIPPTTALVMKEVGIEKGSAEPNSIIV--GDLPIEAAVRIARMKLDDMLSYELKTAVKEVIGTCVSVGVTVDGKKPKEILAAISAGQYDSVLE 157          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METM7 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = -1
Query:  147 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 536
            GPLG++  ++ + I  E  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCVSVG  V+G  P++ Q+ +  G  +
Sbjct:   26 GPLGVNIMQVVQKI-NEMTKDYDGMSVPVKVIVNTDKRTFEVEVGIPPASALVKKELGITTGSQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAVDAGQFD 155          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METM6 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = -1
Query:  147 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 536
            GPLG++  ++ + I  E  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCVSVG  V+G  P++ Q+ +  G  +
Sbjct:   26 GPLGVNIMQVVQKI-NEMTKDYDGMSVPVKVIVNTDKRTFEVEVGIPPASALVKKELGITTGSQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAVDAGQFD 155          
The following BLAST results are available for this feature:
BLAST of CB304997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL11_METVS2.133e-1433.0850S ribosomal protein L11P OS=Methanococcus vannie... [more]
RL11_METHJ2.133e-1434.6250S ribosomal protein L11P OS=Methanospirillum hun... [more]
RL11_METMJ2.786e-1434.8550S ribosomal protein L11P OS=Methanoculleus maris... [more]
RL11_KORCO3.639e-1433.8550S ribosomal protein L11P OS=Korarchaeum cryptofi... [more]
RL11_UNCMA4.752e-1435.6650S ribosomal protein L11P OS=Uncultured methanoge... [more]
RL11_HYPBU8.106e-1437.6950S ribosomal protein L11P OS=Hyperthermus butylic... [more]
RL11_METS51.059e-1339.3950S ribosomal protein L11P OS=Metallosphaera sedul... [more]
RL11_METPE1.059e-1333.0950S ribosomal protein L11P OS=Methanosphaerula pal... [more]
RL11_METM73.080e-1333.0850S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METM63.080e-1333.0850S ribosomal protein L11P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304997 ID=CB304997; Name=CB304997; organism=Citrus sinensis; type=EST; length=539bp
TTTTTTTTTTTTTTTTTTTTTTTTTNNNNTACTGTAAAGATCCAAAACTG
ATAATTAAAAAAAAGGCACTGATATATAGAGATAAAAACAAAAATTAAAA
TCTAAAATAGACCCCCTCACAAACAGAGTCTTCAATCAAGAGGAATTTCG
ACATCACCATCAGTGATCTCCTGCTGCAGGTCCCTAGGGTCCTTGCCATC
GACCGTACACCCAACAGAAACGCATGTGCCCAAAATCTCCTTAACGGTGC
CACTCAAATCCTTAGCCATCGACCTGGGCCGCATCACTTTTGCGATTTCG
ATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTGATGTTCTTGGTCTT
CTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAATCACCAGGGCGGCGG
CGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCTGGACGGTGAGCTTG
ACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGATGTC
CTCTCCGATTTTCTTTGGGGAGAGACCGAGGGGACCGCC
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