CB304997

Overview
NameCB304997
Unique NameCB304997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13078 contig Csv1_Contig13078:276..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METBF (50S ribosomal protein L11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 43/129 (33.33%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+L++K L   +        +   GNI++  V +IA++ +   ++ DL  T+KE++GTCV +G TV+G + RD Q+ +  G
Sbjct:   25 GPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLIMKELGIQKGSGNAGSEVV--GNISISQVAKIARMKKEDVLSYDLKATMKEVMGTCVPMGVTVEGVEARDSQKALDQG 150          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_DESK1 (50S ribosomal protein L11P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 51/139 (36.69%), Postives = 81/139 (58.27%), Query Frame = -1
Query:  156 GGPLG--LSPKKIG-EDIAK---ETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 539
            G PLG  LSP K+    + K   +  KD++GL V V++T+    ++ +V V +P+  AL++K    K+P  D    K     GNI+ + V+++A + R    AK L   VK +LGT  S+G TVDGKDP+++Q+ + +G
Sbjct:   18 GPPLGPTLSPYKVNIPQVVKAINDATKDFEGLSVPVEITIDIDTKEFEVRVGIPTTTALLMKEAGAKQPTGDPAHQKI----GNISFEQVVKVAILKRDSLTAKTLRAAVKTVLGTARSIGITVDGKDPKEVQKLVDEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METMP (50S ribosomal protein L11P OS=Methanococcus maripaludis GN=rpl11p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.254e-13
Identity = 46/135 (34.07%), Postives = 78/135 (57.78%), Query Frame = -1
Query:  147 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 536
            GPLG++  ++ + I   T KD++G+ V VK+ V   +    V   +P A+AL+ K +       K ++  KH   GNIT++ +++IAK+ +   +A +L    KE++GTCVSVG +V+G  P + Q+ I  G  +
Sbjct:   26 GPLGVNIMQVVQKINNMT-KDYEGMSVPVKVIVDTDKRTFEVEVGIPPASALIKKEIGI----EKGSQEPKHQVAGNITMEQIVKIAKMKQDAMLAYNLKNASKEVVGTCVSVGISVEGMTPSEAQKAIDAGQFD 155          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METM5 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = -1
Query:  147 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 536
            GPLG++  ++ + I  +  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCVSVG  V+G  P++ Q+ I  G  +
Sbjct:   26 GPLGVNIMQVVQKI-NDMTKDYDGMSVPVKVIVDTDKRTFEVEVGIPPASALVKKELGIATGAQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAIDAGQFD 155          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METLZ (50S ribosomal protein L11P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 46/130 (35.38%), Postives = 72/130 (55.38%), Query Frame = -1
Query:  153 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV--PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGD 536
            GPLG++ K + +DI K+TA ++ G+ V V + V +++     V  P   ALV+K  +        T N +  GN+ L+ VI IAK+     ++ DL    KE++GTCVSVG TV+GK  +     +  G+
Sbjct:   25 GPLGINVKAVVDDINKKTA-EFNGMSVPVTVMVDDKKNVTLTVGIPPTTALVMK--EAGVEKGSGTPNTQAVGNLPLEAVIRIAKMKMESMLSYDLKTAAKEVMGTCVSVGVTVEGKTAKQAIAAVNAGE 151          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METMA (50S ribosomal protein L11P OS=Methanosarcina mazei GN=rpl11p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 42/129 (32.56%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+LV+K L   +        +   GN+T+  V +IA++ +   ++ DL  T+KE++GTCV +G  V+G   +D Q+ + +G
Sbjct:   25 GPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLVMKELGIQKGSGNAGSEVV--GNLTIPQVAKIARMKKEDVLSYDLKATMKEVMGTCVPMGVNVEGMKAKDCQKALDEG 150          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_SULAC (50S ribosomal protein L11P OS=Sulfolobus acidocaldarius GN=rpl11p PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 45/130 (34.62%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  156 LGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKAL--KEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 530
            LGL+ +++ + I   TA+ +KG+ V V + + +   K  +   VP+  +L++KA+  +EP  D    K     GN+ L+ + +IA   +P+  AK L+  +K +LGT  S+G TV+GKDP+D+ +EI  G
Sbjct:   28 LGLNVQEVVKKINDVTAQ-FKGMSVPVTIEIDSSTKKYDIKVGVPTTTSLLLKAINAQEPSGDPAHKKI----GNLDLEQIADIAIKKKPQLSAKTLTAAIKSLLGTARSIGITVEGKDPKDVIKEIDQG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_SULIM (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.406e-12
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = -1
Query:  156 LGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 530
            LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K   + EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:   28 LGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGVSEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_NITMS (50S ribosomal protein L11P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 41/130 (31.54%), Postives = 74/130 (56.92%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++  ++   I  +T KD++G++V V + V +   K  +   +PSAAAL++K  +   +        +  G++T+D V+++A      S A  L    K I+GTC+++G  V+GK P+++  EI +G
Sbjct:   26 GPLGVNIMEVINAINDKT-KDFEGMKVPVTVIVDSDTKKYEIEIGIPSAAALIMK--EAGIQKGSGASGTEWAGDVTMDAVVKVANTKLENSYASSLKSVAKTIVGTCLALGVKVEGKTPKEITAEINEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METS3 (50S ribosomal protein L11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 38/130 (29.23%), Postives = 76/130 (58.46%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GP G++  ++ E+I  ++A D+ G++V VK+++     +  +    P   +L+++ L   +   +   +I    ++ +D  ++IA++     +A D    VKE++GTCVS+G +VDGKDPR+ Q+++  G
Sbjct:   26 GPFGINMMQVVEEINNKSA-DFAGMKVPVKVSIDRDTKEFEIEIGTPPTTSLIMEELGIEKASHEPGADIV--ADLPIDKALKIARMKFDSLLANDYKAGVKEVMGTCVSMGLSVDGKDPREAQKDVDAG 152          
The following BLAST results are available for this feature:
BLAST of CB304997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL11_METBF3.080e-1333.3350S ribosomal protein L11P OS=Methanosarcina barke... [more]
RL11_DESK13.080e-1336.6950S ribosomal protein L11P OS=Desulfurococcus kamc... [more]
RL11_METMP5.254e-1334.0750S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METM58.962e-1333.0850S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METLZ8.962e-1335.3850S ribosomal protein L11P OS=Methanocorpusculum l... [more]
RL11_METMA1.170e-1232.5650S ribosomal protein L11P OS=Methanosarcina mazei... [more]
RL11_SULAC1.529e-1234.6250S ribosomal protein L11P OS=Sulfolobus acidocald... [more]
RL11_SULIM3.406e-1234.8550S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_NITMS4.448e-1231.5450S ribosomal protein L11P OS=Nitrosopumilus marit... [more]
RL11_METS34.448e-1229.2350S ribosomal protein L11P OS=Methanobrevibacter s... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304997 ID=CB304997; Name=CB304997; organism=Citrus sinensis; type=EST; length=539bp
TTTTTTTTTTTTTTTTTTTTTTTTTNNNNTACTGTAAAGATCCAAAACTG
ATAATTAAAAAAAAGGCACTGATATATAGAGATAAAAACAAAAATTAAAA
TCTAAAATAGACCCCCTCACAAACAGAGTCTTCAATCAAGAGGAATTTCG
ACATCACCATCAGTGATCTCCTGCTGCAGGTCCCTAGGGTCCTTGCCATC
GACCGTACACCCAACAGAAACGCATGTGCCCAAAATCTCCTTAACGGTGC
CACTCAAATCCTTAGCCATCGACCTGGGCCGCATCACTTTTGCGATTTCG
ATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTGATGTTCTTGGTCTT
CTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAATCACCAGGGCGGCGG
CGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCTGGACGGTGAGCTTG
ACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGATGTC
CTCTCCGATTTTCTTTGGGGAGAGACCGAGGGGACCGCC
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