CB304997

Overview
NameCB304997
Unique NameCB304997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13078 contig Csv1_Contig13078:276..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METBU (50S ribosomal protein L11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 40/129 (31.01%), Postives = 77/129 (59.69%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN-RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++ K + E I ++T KD+ G++V VK+ V + +  ++ V  P  +AL++K L   +   +    +   GN+ +  V +IA++ +   ++  L   +KE++GTCV +G T++  DPR+ Q+ + +G
Sbjct:   25 GPLGVNIKDVIEKINEKT-KDYNGMQVPVKVIVNDDKSVEIEVGTPPTSALILKELNIEKGSGESGTVVV--GNLEIAQVAKIARMKKDDILSYSLKAAIKEVMGTCVPMGVTIENLDPRECQKAVDEG 150          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_SULIY (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = -1
Query:  156 LGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 530
            LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:   28 LGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_SULIL (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = -1
Query:  156 LGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 530
            LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:   28 LGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_SULIK (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = -1
Query:  156 LGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 530
            LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:   28 LGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_SULIA (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = -1
Query:  156 LGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 530
            LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:   28 LGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METST (50S ribosomal protein L11P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 40/133 (30.08%), Postives = 76/133 (57.14%), Query Frame = -1
Query:  147 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLT--VQNRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 536
            GPLG++  ++ E+I K+TA D+ G++V VK+T  +  +  ++++  P   ALV+  L       +    +    + +++   ++A++     +A D     KE++GTCVS+G  V GKD R+ Q++I +GD +
Sbjct:   26 GPLGINMMQVVEEINKKTA-DFGGMKVPVKITADMDTKDFEISIGTPPTTALVLDELGIESGSHEPGTEVA--ADFSVEQAFKVARMKFDDLLANDYKHATKEVIGTCVSMGINVQGKDGRETQKDIDNGDYD 155          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_META3 (50S ribosomal protein L11P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 44/133 (33.08%), Postives = 78/133 (58.65%), Query Frame = -1
Query:  147 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 536
            GPLG++   + ++I ++T KD+ G+ V VK+ V   +R  ++ V +P  +AL IK     ++   + K I   GN++++  ++IAK+ +   ++  L    KE++GTCVS G  V+G  PRD Q+ I  G+ +
Sbjct:   26 GPLGINIMNVVKEINEKT-KDYAGMSVPVKVIVNTDDRSFEIEVGIPPTSAL-IKTELGLDKGSTEPKAIVA-GNLSMEQAVKIAKMKKDSMLSFTLKNATKEVIGTCVSTGINVEGMSPRDAQKAIDAGEFD 155          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_SULSO (50S ribosomal protein L11P OS=Sulfolobus solfataricus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.294e-11
Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = -1
Query:  156 LGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 530
            LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   +K +LGT  S+G TVD +DP++L +E+ +G
Sbjct:   28 LGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSSTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAALKSMLGTAKSIGLTVDNRDPKELVKEVEEG 152          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METAC (50S ribosomal protein L11P OS=Methanosarcina acetivorans GN=rpl11p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.294e-11
Identity = 39/129 (30.23%), Postives = 78/129 (60.47%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+LV+K L   +        +   GN+T+  V ++A++ +   ++ DL   +KE++G+CV +G  V+G   +D Q+ + +G
Sbjct:   25 GPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLVMKELGIQKGSGNAGSEVV--GNLTISQVAKVARMKKEDVLSYDLKAAMKEVMGSCVPMGVNVEGMKAKDCQKALDEG 150          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_SULIN (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = -1
Query:  156 LGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 530
            LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+I  + +P    K L   VK +LGT  S+G TV+ KDP++L +E+ +G
Sbjct:   28 LGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIVIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
The following BLAST results are available for this feature:
BLAST of CB304997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL11_METBU4.448e-1231.0150S ribosomal protein L11P OS=Methanococcoides bur... [more]
RL11_SULIY5.809e-1234.8550S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_SULIL5.809e-1234.8550S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_SULIK5.809e-1234.8550S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_SULIA5.809e-1234.8550S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_METST9.909e-1230.0850S ribosomal protein L11P OS=Methanosphaera stadt... [more]
RL11_META39.909e-1233.0850S ribosomal protein L11P OS=Methanococcus aeolic... [more]
RL11_SULSO1.294e-1134.0950S ribosomal protein L11P OS=Sulfolobus solfatari... [more]
RL11_METAC1.294e-1130.2350S ribosomal protein L11P OS=Methanosarcina aceti... [more]
RL11_SULIN1.690e-1134.0950S ribosomal protein L11P OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304997 ID=CB304997; Name=CB304997; organism=Citrus sinensis; type=EST; length=539bp
TTTTTTTTTTTTTTTTTTTTTTTTTNNNNTACTGTAAAGATCCAAAACTG
ATAATTAAAAAAAAGGCACTGATATATAGAGATAAAAACAAAAATTAAAA
TCTAAAATAGACCCCCTCACAAACAGAGTCTTCAATCAAGAGGAATTTCG
ACATCACCATCAGTGATCTCCTGCTGCAGGTCCCTAGGGTCCTTGCCATC
GACCGTACACCCAACAGAAACGCATGTGCCCAAAATCTCCTTAACGGTGC
CACTCAAATCCTTAGCCATCGACCTGGGCCGCATCACTTTTGCGATTTCG
ATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTGATGTTCTTGGTCTT
CTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAATCACCAGGGCGGCGG
CGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCTGGACGGTGAGCTTG
ACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGATGTC
CTCTCCGATTTTCTTTGGGGAGAGACCGAGGGGACCGCC
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