CB304997

Overview
NameCB304997
Unique NameCB304997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13078 contig Csv1_Contig13078:276..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METB6 (50S ribosomal protein L11P OS=Methanoregula boonei (strain 6A8) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = -1
Query:  156 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNR-QAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDG 536
            GPLG++ K + ++I  +TA  + G++V VK+ V ++ Q  V V +P   AL+ K     +   +   N K  GN+  +  + IAK+     ++ +L    KE++GTCVS+G  VDGK P+++  +I  G
Sbjct:   25 GPLGINVKAVVDEINAKTAS-FNGMQVPVKVEVNDKKQFTVTVGIPPTTALIKKEANIEKGSAEP--NAKVAGNLPFEAAVRIAKMKLEGMLSYELKTATKEVVGTCVSMGVNVDGKRPKEVLADIAAG 150          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL11_METTP (50S ribosomal protein L11P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 41/133 (30.83%), Postives = 75/133 (56.39%), Query Frame = -1
Query:  147 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNR---QAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVE 536
            GPLG++   +   I  E  KD  G++V VK+ V++R   + +V   P++A L+ +A  E     KK       G+I++D VI++A++ R   ++ +L   V EI+GTC ++G  +DG   +++Q+ +  G  +
Sbjct:   25 GPLGVNVAAVVAKI-NELTKDLNGMQVPVKIIVKSRTEFEIEVGTPPTSALLLKEAGVEKGSGDKKN----FVGDISMDQVIKVAEIKRKNLLSSNLKSAVSEIVGTCGTLGIKIDGLTSKEVQKALASGSYD 152          
The following BLAST results are available for this feature:
BLAST of CB304997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL11_METB62.207e-1133.3350S ribosomal protein L11P OS=Methanoregula boonei... [more]
RL11_METTP2.883e-1130.8350S ribosomal protein L11P OS=Methanosaeta thermop... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304997 ID=CB304997; Name=CB304997; organism=Citrus sinensis; type=EST; length=539bp
TTTTTTTTTTTTTTTTTTTTTTTTTNNNNTACTGTAAAGATCCAAAACTG
ATAATTAAAAAAAAGGCACTGATATATAGAGATAAAAACAAAAATTAAAA
TCTAAAATAGACCCCCTCACAAACAGAGTCTTCAATCAAGAGGAATTTCG
ACATCACCATCAGTGATCTCCTGCTGCAGGTCCCTAGGGTCCTTGCCATC
GACCGTACACCCAACAGAAACGCATGTGCCCAAAATCTCCTTAACGGTGC
CACTCAAATCCTTAGCCATCGACCTGGGCCGCATCACTTTTGCGATTTCG
ATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTGATGTTCTTGGTCTT
CTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAATCACCAGGGCGGCGG
CGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCTGGACGGTGAGCTTG
ACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGATGTC
CTCTCCGATTTTCTTTGGGGAGAGACCGAGGGGACCGCC
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