CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_NICGL (Maturase K OS=Nicotiana glauca GN=matK PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.665e-44
Identity = 85/129 (65.89%), Postives = 97/129 (75.19%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+YLV  WQ HF      GR+ +N L    ++ NF+GYLS VRLN  +VRSQMLENSFLI+N++KK DT VP+I LIGSL KA FC  LGHPISK  WSD SDS +IDRF RICRNL HYYSGS
Sbjct:  297 LMNKWKFYLVNFWQCHFSLCFHTGRIHINQL--SNHSRNFMGYLSSVRLNPSMVRSQMLENSFLINNAIKKFDTLVPLIPLIGSLAKANFCTVLGHPISKPVWSDLSDSDIIDRFGRICRNLFHYYSGS 423
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CAMSS (Maturase K OS=Camellia sasanqua GN=matK PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.665e-44
Identity = 87/129 (67.44%), Postives = 102/129 (79.07%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK YLV  WQ +F   SQPGR+ +N L   K++ +FLGYLS VRLN  +VRSQMLENSFLI N++KK DT VPII +IGSL+KA+FCN LGHPISK  W+D SDS +IDRF RI RNLSHY+SGS
Sbjct:  289 LMNKWKSYLVNFWQCYFYMWSQPGRIHINQL--SKHSPDFLGYLSSVRLNPSMVRSQMLENSFLIGNAIKKFDTIVPIIPMIGSLSKAKFCNVLGHPISKPVWADLSDSDIIDRFGRIYRNLSHYHSGS 415
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_AMACA (Maturase K OS=Amaranthus caudatus GN=matK PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.665e-44
Identity = 82/129 (63.57%), Postives = 100/129 (77.52%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKYY +  WQ HF   SQP R+ +N L    Y+++F+G++S V LNS ++RSQMLENSFL+DN +KK DT VPII L+GSL KA+FCN L HPISKS W+D SD+ +IDRF RICRNLSHYYSGS
Sbjct:  293 LMYKWKYYFIAFWQCHFSVWSQPRRIYINQL--SNYSLDFMGFISNVGLNSSVIRSQMLENSFLVDNIIKKFDTIVPIIPLVGSLAKAKFCNGLRHPISKSGWTDLSDADIIDRFGRICRNLSHYYSGS 419
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_NICTO (Maturase K OS=Nicotiana tomentosiformis GN=matK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.705e-44
Identity = 85/129 (65.89%), Postives = 98/129 (75.97%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+YLV  WQ HF      GR+ +N L    ++ +F+GYLS VRLNS +VRSQMLENSFLI+N++KK DT VPII LIGSL KA FC  LGHPISK  WSD SDS +IDRF RIC+NL HYYSGS
Sbjct:  297 LMNKWKFYLVNFWQCHFSLCFHTGRIHINQL--SNHSRDFMGYLSSVRLNSSMVRSQMLENSFLINNAIKKFDTLVPIIPLIGSLAKANFCTVLGHPISKPVWSDLSDSDIIDRFGRICKNLFHYYSGS 423
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_KUNER (Maturase K OS=Kunzea ericoides GN=matK PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.705e-44
Identity = 87/129 (67.44%), Postives = 102/129 (79.07%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK YLV LWQ HF    QPGR+ +N L   KY+++FLGY S VRLNS +VRSQMLEN FLI+N+MKK +T VPII LIGSL K+ FCN  GHPISK + +D SDS +IDRF+RICRNLSHY+SGS
Sbjct:  293 LMNKWKCYLVNLWQYHFSVWFQPGRIDINQLC--KYSLDFLGYRSSVRLNSSVVRSQMLENLFLINNAMKKFETIVPIIPLIGSLYKSNFCNTFGHPISKPSRTDSSDSDIIDRFLRICRNLSHYHSGS 419
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_KUNCA (Maturase K OS=Kunzea capitata GN=matK PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.705e-44
Identity = 87/129 (67.44%), Postives = 102/129 (79.07%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK YLV LWQ HF    QPGR+ +N L   KY+++FLGY S VRLNS +VRSQMLEN FLI+N+MKK +T VPII LIGSL K+ FCN  GHPISK + +D SDS +IDRF+RICRNLSHY+SGS
Sbjct:  293 LMNKWKCYLVNLWQYHFSVWFQPGRIDINQLC--KYSLDFLGYRSSVRLNSSVVRSQMLENLFLINNAMKKFETIVPIIPLIGSLYKSNFCNTFGHPISKPSRTDSSDSDIIDRFLRICRNLSHYHSGS 419
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CHIAL (Maturase K OS=Chiococca alba GN=matK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.705e-44
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ +F      GRV +N L    +++NF+GYLS VRLN  +VRSQMLENSFLI+N++KK+DT VPI+ LIGSL KA+FCN LGHPISK  W+  SDS +IDRF +ICRNLSHY+SGS
Sbjct:  293 LMNKWKYYLVNFWQSYFDLWVHSGRVYINQL--PNHSLNFIGYLSSVRLNPSMVRSQMLENSFLINNAIKKLDTLVPIVPLIGSLAKAKFCNLLGHPISKPAWAGLSDSDIIDRFGQICRNLSHYHSGS 419
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_BROHE (Maturase K OS=Browningia hertlingiana GN=matK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.705e-44
Identity = 84/129 (65.12%), Postives = 100/129 (77.52%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWKYYL   WQ HF   S P R+ +N L   K++++F+G+ S VRLNS +VRSQM+ENSFLIDN +KK DT V II L+GSL KA+FCN LGHPISKS W+D  DS +IDRF RICRNLSHYYSGS
Sbjct:  295 LMHKWKYYLFNFWQCHFSLWSPPRRIYINRL--SKHSLDFMGFFSSVRLNSSVVRSQMVENSFLIDNPIKKFDTIVRIIPLVGSLAKAKFCNVLGHPISKSVWTDLLDSDIIDRFGRICRNLSHYYSGS 421
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_AUSVS (Maturase K OS=Austrocylindropuntia vestita GN=matK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.705e-44
Identity = 83/129 (64.34%), Postives = 100/129 (77.52%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKYYL+  WQ HF   SQP R+ +N L   K++++F+ + S VRLNS +VRSQM+ENSFLIDN +KK DT V II L+GSL KA+FCN LGHP+SKS W+D  DS +IDRF RICRNLSHYYSGS
Sbjct:  297 LMYKWKYYLINFWQCHFSLWSQPRRIYINRL--SKHSLDFMSFFSSVRLNSSVVRSQMVENSFLIDNPIKKFDTIVRIIPLVGSLAKAKFCNVLGHPVSKSVWTDLLDSDIIDRFGRICRNLSHYYSGS 423
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_POTAN (Maturase K OS=Potentilla anserina GN=matK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.137e-43
Identity = 84/129 (65.12%), Postives = 100/129 (77.52%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKYYLV  WQ HF   SQPGR+ +N L+  KY+ +FLGYLS +R N  +VRSQ+LENSFL++N MKK+DT  P I +IGSL K +FCN LGHPISKS+W+D SDS +I RFVRI  NLSHYYSGS
Sbjct:  288 LMTKWKYYLVNFWQCHFYVWSQPGRIHINQLF--KYSFDFLGYLSSIRPNISVVRSQLLENSFLMNNLMKKLDTLFPTIPMIGSLAKVKFCNTLGHPISKSSWADLSDSDIIGRFVRIGGNLSHYYSGS 414
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_NICGL6.665e-4465.89Maturase K OS=Nicotiana glauca GN=matK PE=3 SV=1[more]
MATK_CAMSS6.665e-4467.44Maturase K OS=Camellia sasanqua GN=matK PE=3 SV=1[more]
MATK_AMACA6.665e-4463.57Maturase K OS=Amaranthus caudatus GN=matK PE=3 SV=... [more]
MATK_NICTO8.705e-4465.89Maturase K OS=Nicotiana tomentosiformis GN=matK PE... [more]
MATK_KUNER8.705e-4467.44Maturase K OS=Kunzea ericoides GN=matK PE=3 SV=2[more]
MATK_KUNCA8.705e-4467.44Maturase K OS=Kunzea capitata GN=matK PE=3 SV=2[more]
MATK_CHIAL8.705e-4465.12Maturase K OS=Chiococca alba GN=matK PE=3 SV=1[more]
MATK_BROHE8.705e-4465.12Maturase K OS=Browningia hertlingiana GN=matK PE=3... [more]
MATK_AUSVS8.705e-4464.34Maturase K OS=Austrocylindropuntia vestita GN=matK... [more]
MATK_POTAN1.137e-4365.12Maturase K OS=Potentilla anserina GN=matK PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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