CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_BETVU (Maturase K OS=Beta vulgaris GN=matK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.137e-43
Identity = 80/129 (62.02%), Postives = 103/129 (79.84%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWKYY++  WQ +F   SQP ++ +N L    ++++F+G+ S VRLNS ++RSQ+LENSFLI+N +KK DT VPII L+GSL KA+FCN LGHP+SKS W+D SDS +IDRF RICRNLSHYYSGS
Sbjct:  293 LMHKWKYYIIYFWQCNFSVWSQPRKIYINRL--SNHSLDFMGFFSSVRLNSSVIRSQLLENSFLIENIIKKFDTIVPIIPLVGSLAKAKFCNVLGHPVSKSVWADLSDSDIIDRFGRICRNLSHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_AGOFL (Maturase K OS=Agonis flexuosa GN=matK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.137e-43
Identity = 88/129 (68.22%), Postives = 100/129 (77.52%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK YLV LWQ HF    QPGR+ +N L   KY+ +FLGY S VRLNS +VRSQMLEN FLI+N+MKK +T VPII LIGSL K+ FCN  GHPISK T  D SDS +IDRF+RICRNLSHY+SGS
Sbjct:  291 LMNKWKCYLVNLWQYHFSVWFQPGRIDINQLC--KYSFDFLGYRSSVRLNSSVVRSQMLENLFLINNAMKKFETIVPIIPLIGSLYKSNFCNTFGHPISKPTRIDSSDSDIIDRFLRICRNLSHYHSGS 417          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_NICPL (Maturase K OS=Nicotiana plumbaginifolia GN=matK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.485e-43
Identity = 85/129 (65.89%), Postives = 97/129 (75.19%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+YLV  WQ HF      GR+ +N L    ++ +F+GYLS VRLN  +VRSQMLENSFLI+N++KK DT VPII LIGSL KA FC  LGHPISK  WSD SDS +IDRF RICRNL HYYSGS
Sbjct:  297 LMNKWKFYLVNFWQCHFSLCFHTGRIHINQL--SNHSRDFMGYLSSVRLNPSMVRSQMLENSFLINNAIKKFDTLVPIIPLIGSLAKANFCTVLGHPISKPVWSDLSDSDIIDRFGRICRNLFHYYSGS 423          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_NICAL (Maturase K OS=Nicotiana alata GN=matK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.485e-43
Identity = 85/129 (65.89%), Postives = 97/129 (75.19%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+YLV  WQ HF      GR+ +N L    ++ +F+GYLS VRLN  +VRSQMLENSFLI+N++KK DT VPII LIGSL KA FC  LGHPISK  WSD SDS +IDRF RICRNL HYYSGS
Sbjct:  297 LMNKWKFYLVNFWQCHFSLCFHTGRIHINQL--SNHSRDFMGYLSSVRLNPSMVRSQMLENSFLINNAIKKFDTLVPIIPLIGSLAKANFCTVLGHPISKPVWSDLSDSDIIDRFGRICRNLFHYYSGS 423          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CHEBH (Maturase K OS=Chenopodium bonus-henricus GN=matK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.485e-43
Identity = 83/129 (64.34%), Postives = 102/129 (79.07%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWKYYL+   Q HF   SQP R+ +N L    ++++F+G+LS VRLNS ++RSQMLENSFLI+N  KK DT VPII L+GSL KA+FCN LGHPISKS W+D SDS ++DRF RICRN+SHYYSGS
Sbjct:  293 LMHKWKYYLIYFGQCHFSVWSQPKRLYINRL--SNHSLDFMGFLSSVRLNSSVIRSQMLENSFLIENISKKFDTIVPIIPLVGSLAKAKFCNVLGHPISKSVWTDLSDSDILDRFGRICRNISHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_BERLA (Maturase K OS=Berzelia lanuginosa GN=matK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.485e-43
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYY V  WQ +F   S+PGRV +N L    ++++ LGYLS VRLN  +VRSQMLE +F+IDN+MKK D  VPII LIGSL KA+FCN LGHPISK+ W+D SDS +IDRF RICR+LSHY+SGS
Sbjct:  292 LMNKWKYYFVNFWQCYFYLWSKPGRVYINQL--SNHSLDLLGYLSSVRLNPSMVRSQMLEKAFIIDNAMKKFDAIVPIIPLIGSLAKAKFCNVLGHPISKAFWTDLSDSDIIDRFGRICRSLSHYHSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_POPTR (Maturase K OS=Populus trichocarpa GN=matK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 87/131 (66.41%), Postives = 100/131 (76.34%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSG--VRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKYYLV L Q HF    QP ++ +N   L K++   LGYLS   VRLN  +VRSQMLEN+FL+DN M K+DT V II LIGSL K +FCNA+GHPISK TW+DFSDS +IDRFVRICRNLSHYYSGS
Sbjct:  294 LMKKWKYYLVNLCQCHFDVCFQPQKIHINPFSLYKHSFALLGYLSSSSVRLNLSVVRSQMLENAFLMDNIMNKLDTTVSIIPLIGSLAKMKFCNAVGHPISKPTWADFSDSDIIDRFVRICRNLSHYYSGS 424          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_POPNI (Maturase K OS=Populus nigra GN=matK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 87/131 (66.41%), Postives = 100/131 (76.34%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSG--VRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKYYLV L Q HF    QP ++ +N   L K++   LGYLS   VRLN  +VRSQMLEN+FL+DN M K+DT V II LIGSL K +FCNA+GHPISK TW+DFSDS +IDRFVRICRNLSHYYSGS
Sbjct:  294 LMKKWKYYLVNLCQCHFDVCFQPQKIHINPFSLYKHSFALLGYLSSSSVRLNLSVVRSQMLENAFLMDNIMNKLDTTVSIIPLIGSLAKMKFCNAVGHPISKPTWADFSDSDIIDRFVRICRNLSHYYSGS 424          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_POPAL (Maturase K OS=Populus alba GN=matK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 87/131 (66.41%), Postives = 100/131 (76.34%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSG--VRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKYYLV L Q HF    QP ++ +N   L K++   LGYLS   VRLN  +VRSQMLEN+FL+DN M K+DT V II LIGSL K +FCNA+GHPISK TW+DFSDS +IDRFVRICRNLSHYYSGS
Sbjct:  294 LMKKWKYYLVNLCQCHFDVCFQPQKIHINPFSLYKHSFALLGYLSSSSVRLNLSVVRSQMLENAFLMDNIMNKLDTTVSIIPLIGSLAKMKFCNAVGHPISKPTWADFSDSDIIDRFVRICRNLSHYYSGS 424          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MAMHA (Maturase K OS=Mammillaria haageana GN=matK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 82/129 (63.57%), Postives = 100/129 (77.52%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWKYYL+  WQ HF   SQP R+ +N L   K++++F+G+ S VRLNS ++RSQM+ NSFLIDN +KK DT V II L+GSL KA+FCN LGHPISKS W+D  DS +IDRF RICRNLSHYY GS
Sbjct:  297 LMHKWKYYLLNFWQCHFSLWSQPRRIYINRL--SKHSLDFMGFFSSVRLNSSVIRSQMVANSFLIDNRIKKFDTIVRIIPLVGSLAKAKFCNVLGHPISKSVWTDLLDSDIIDRFGRICRNLSHYYGGS 423          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_BETVU1.137e-4362.02Maturase K OS=Beta vulgaris GN=matK PE=3 SV=1[more]
MATK_AGOFL1.137e-4368.22Maturase K OS=Agonis flexuosa GN=matK PE=3 SV=1[more]
MATK_NICPL1.485e-4365.89Maturase K OS=Nicotiana plumbaginifolia GN=matK PE... [more]
MATK_NICAL1.485e-4365.89Maturase K OS=Nicotiana alata GN=matK PE=3 SV=1[more]
MATK_CHEBH1.485e-4364.34Maturase K OS=Chenopodium bonus-henricus GN=matK P... [more]
MATK_BERLA1.485e-4365.12Maturase K OS=Berzelia lanuginosa GN=matK PE=3 SV=... [more]
MATK_POPTR1.939e-4366.41Maturase K OS=Populus trichocarpa GN=matK PE=3 SV=... [more]
MATK_POPNI1.939e-4366.41Maturase K OS=Populus nigra GN=matK PE=3 SV=1[more]
MATK_POPAL1.939e-4366.41Maturase K OS=Populus alba GN=matK PE=3 SV=1[more]
MATK_MAMHA1.939e-4363.57Maturase K OS=Mammillaria haageana GN=matK PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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