CB305000 | Citrus Genome Database

Overview


Name	CB305000
Unique Name	CB305000
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	419

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1946	contig	Csv1_Contig1946:641..1059.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PENDO (Maturase K OS=Pentaplaris doroteae GN=matK PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.415e-48
Identity = 92/129 (71.32%), Postives = 107/129 (82.95%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYY V LWQ +F   SQ GRV++N L   KY+++FLGYLS VRLN   VRSQMLENSF+IDN+MK +DT +PII LIGSL+KA+FCN LGHPISK TW+D SDS +IDRFVRICRNLSHY+SGS
Sbjct:  290 LMNKWKYYFVDLWQYYFYMWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSAVRSQMLENSFIIDNAMKTLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSSDSDIIDRFVRICRNLSHYHSGS 416

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CUPAN (Maturase K OS=Cupaniopsis anacardioides GN=matK PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.825e-48
Identity = 92/129 (71.32%), Postives = 106/129 (82.17%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYY V LWQ HF   SQP R  +NHL+  K +INFLGYLS  R N L+VRSQMLEN++LIDN+MKK +TAVPII ++ SLTKARFCN LG+PISK  W+D SDSH+IDRFVRICRNLSHY+SGS
Sbjct:  293 LMNKWKYYFVNLWQWHFHVWSQPVRAHINHLH--KDSINFLGYLSSRRRNPLVVRSQMLENAYLIDNAMKKFETAVPIIPMVESLTKARFCNPLGNPISKPIWADSSDSHIIDRFVRICRNLSHYHSGS 419

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_OENPA (Maturase K OS=Oenothera parviflora GN=matK PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.298e-47
Identity = 90/129 (69.77%), Postives = 109/129 (84.50%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +N L  GKY+++FLGY S V+L S +VR+Q LENSFLI+N+MKK++T VPI+ LIGSL++A+FCNALGHPISK T +D SDS +IDRFVRICRNLSHY+SGS
Sbjct:  296 LMNKWKYYLVNLWQYHFSVWSQPGRININQL--GKYSLDFLGYFSNVQLKSSVVRNQTLENSFLINNAMKKLETTVPILPLIGSLSRAKFCNALGHPISKPTRTDSSDSDIIDRFVRICRNLSHYHSGS 422

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_OENGL (Maturase K OS=Oenothera glazioviana GN=matK PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.298e-47
Identity = 90/129 (69.77%), Postives = 109/129 (84.50%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +N L  GKY+++FLGY S V+L S +VR+Q LENSFLI+N+MKK++T VPI+ LIGSL++A+FCNALGHPISK T +D SDS +IDRFVRICRNLSHY+SGS
Sbjct:  296 LMNKWKYYLVNLWQYHFSVWSQPGRININQL--GKYSLDFLGYFSNVQLKSSVVRNQTLENSFLINNAMKKLETTVPILPLIGSLSRAKFCNALGHPISKPTRTDSSDSDIIDRFVRICRNLSHYHSGS 422

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_OENEH (Maturase K OS=Oenothera elata subsp. hookeri GN=matK PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.298e-47
Identity = 90/129 (69.77%), Postives = 109/129 (84.50%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +N L  GKY+++FLGY S V+L S +VR+Q LENSFLI+N+MKK++T VPI+ LIGSL++A+FCNALGHPISK T +D SDS +IDRFVRICRNLSHY+SGS
Sbjct:  296 LMNKWKYYLVNLWQYHFSVWSQPGRININQL--GKYSLDFLGYFSNVQLKSSVVRNQTLENSFLINNAMKKLETTVPILPLIGSLSRAKFCNALGHPISKPTRNDSSDSDIIDRFVRICRNLSHYHSGS 422

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_OENBI (Maturase K OS=Oenothera biennis GN=matK PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.298e-47
Identity = 90/129 (69.77%), Postives = 109/129 (84.50%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +N L  GKY+++FLGY S V+L S +VR+Q LENSFLI+N+MKK++T VPI+ LIGSL++A+FCNALGHPISK T +D SDS +IDRFVRICRNLSHY+SGS
Sbjct:  296 LMNKWKYYLVNLWQYHFSVWSQPGRININQL--GKYSLDFLGYFSNVQLKSSVVRNQTLENSFLINNAMKKLETTVPILPLIGSLSRAKFCNALGHPISKPTRNDSSDSDIIDRFVRICRNLSHYHSGS 422

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_OENAR (Maturase K OS=Oenothera argillicola GN=matK PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.298e-47
Identity = 90/129 (69.77%), Postives = 109/129 (84.50%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +N L  GKY+++FLGY S V+L S +VR+Q LENSFLI+N+MKK++T VPI+ LIGSL++A+FCNALGHPISK T +D SDS +IDRFVRICRNLSHY+SGS
Sbjct:  296 LMNKWKYYLVNLWQYHFSVWSQPGRININQL--GKYSLDFLGYFSNVQLKSSVVRNQTLENSFLINNAMKKLETTVPILPLIGSLSRAKFCNALGHPISKPTRTDSSDSDIIDRFVRICRNLSHYHSGS 422

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_KOKDR (Maturase K OS=Kokia drynarioides GN=matK PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.298e-47
Identity = 91/129 (70.54%), Postives = 107/129 (82.95%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+NKWKYY V LWQ +F   SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSFLIDN+MK +DT +PII LIGSL+KA+FCN LGHPISK TW+D  DS +IDRFVRICRNLSHY+SGS
Sbjct:  290 LINKWKYYFVDLWQYYFYLWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFLIDNAMKTLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSPDSDIIDRFVRICRNLSHYHSGS 416

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_VAUCA (Maturase K OS=Vauquelinia californica GN=matK PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.695e-47
Identity = 91/129 (70.54%), Postives = 105/129 (81.40%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ H    SQPGR+ +N L   K++++FLGY S +R N  +VRSQMLENSFL+DN+MKK+DT VPII LIGSL K +FCNALGHPISKSTW+D SD  +IDRFV ICRNLSHYYSGS
Sbjct:  292 LMNKWKYYLVNLWQCHSYVWSQPGRIYINQL--SKHSLDFLGYFSSMRPNLSVVRSQMLENSFLMDNAMKKLDTLVPIIPLIGSLAKVKFCNALGHPISKSTWADSSDFDIIDRFVHICRNLSHYYSGS 418

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PRUPE (Maturase K OS=Prunus persica GN=matK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.214e-47
Identity = 90/129 (69.77%), Postives = 105/129 (81.40%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ H    SQPGR+ +N L   K++++FLGY S +R N  +VRSQMLENSF+ DN+MKK+DT VPII LIGSL K +FCNALGHPISKSTW+D SD  +IDRF+RICRNLSHYYSGS
Sbjct:  292 LMNKWKYYLVNLWQCHSYVWSQPGRIYINKL--SKHSLDFLGYFSSIRPNLSVVRSQMLENSFITDNAMKKLDTLVPIIPLIGSLAKVKFCNALGHPISKSTWADSSDFDIIDRFLRICRNLSHYYSGS 418

The following BLAST results are available for this feature:

BLAST of CB305000 vs. ExPASy Swiss-Prot

BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
MATK_PENDO	3.415e-48	71.32	Maturase K OS=Pentaplaris doroteae GN=matK PE=3 SV...	[more]
MATK_CUPAN	5.825e-48	71.32	Maturase K OS=Cupaniopsis anacardioides GN=matK PE...	[more]
MATK_OENPA	1.298e-47	69.77	Maturase K OS=Oenothera parviflora GN=matK PE=3 SV...	[more]
MATK_OENGL	1.298e-47	69.77	Maturase K OS=Oenothera glazioviana GN=matK PE=3 S...	[more]
MATK_OENEH	1.298e-47	69.77	Maturase K OS=Oenothera elata subsp. hookeri GN=ma...	[more]
MATK_OENBI	1.298e-47	69.77	Maturase K OS=Oenothera biennis GN=matK PE=3 SV=1	[more]
MATK_OENAR	1.298e-47	69.77	Maturase K OS=Oenothera argillicola GN=matK PE=3 S...	[more]
MATK_KOKDR	1.298e-47	70.54	Maturase K OS=Kokia drynarioides GN=matK PE=3 SV=1	[more]
MATK_VAUCA	1.695e-47	70.54	Maturase K OS=Vauquelinia californica GN=matK PE=3...	[more]
MATK_PRUPE	2.214e-47	69.77	Maturase K OS=Prunus persica GN=matK PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA