CB305000 | Citrus Genome Database

Overview


Name	CB305000
Unique Name	CB305000
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	419

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1946	contig	Csv1_Contig1946:641..1059.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PRUDU (Maturase K OS=Prunus dulcis GN=matK PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.214e-47
Identity = 90/129 (69.77%), Postives = 105/129 (81.40%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ H    SQPGR+ +N L   K++++FLGY S +R N  +VRSQMLENSF+ DN+MKK+DT VPII LIGSL K +FCNALGHPISKSTW+D SD  +IDRF+RICRNLSHYYSGS
Sbjct:  292 LMNKWKYYLVNLWQCHSYVWSQPGRIYINKL--SKHSLDFLGYFSSIRPNLSVVRSQMLENSFITDNAMKKLDTLVPIIPLIGSLAKVKFCNALGHPISKSTWADSSDFDIIDRFLRICRNLSHYYSGS 418

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_VITVI (Maturase K OS=Vitis vinifera GN=matK PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.776e-47
Identity = 89/129 (68.99%), Postives = 106/129 (82.17%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQP R+ +N L   K++++FLGYLS VRLN  +VRSQMLEN+F+IDN++KK DT VPII +IGSL KARFCNALGHPISK +W+D SD  +IDRFVRICRN+SHY+SGS
Sbjct:  290 LMNKWKYYLVNFWQCHFYVWSQPVRIHINQL--SKHSLDFLGYLSSVRLNPSVVRSQMLENAFIIDNAIKKFDTIVPIIPIIGSLAKARFCNALGHPISKPSWADSSDYDIIDRFVRICRNISHYHSGS 416

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_SYZAU (Maturase K OS=Syzygium australe GN=matK PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.776e-47
Identity = 93/129 (72.09%), Postives = 107/129 (82.95%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF A  QPGR+ +N L   KY+++FLGY S VRLNS +VRSQMLENSFLI+N+MKK +T VPII LIGSL+KA FCN LGHPISK T +D SDS +IDRF+RICRNLSHY+SGS
Sbjct:  291 LMNKWKYYLVTLWQYHFYAWFQPGRIDINQLC--KYSLDFLGYRSSVRLNSSVVRSQMLENSFLINNAMKKFETIVPIIPLIGSLSKANFCNTLGHPISKPTRADSSDSDIIDRFLRICRNLSHYHSGS 417

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ULMPA (Maturase K OS=Ulmus parvifolia GN=matK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.412e-47
Identity = 91/129 (70.54%), Postives = 105/129 (81.40%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   S+PGR+ +N L   K+++ FLGYLS +RLN  +VRSQMLENSFL+DN+MKK+DT VPI  LIGSL K +FCNALGHPISKSTW+D SD  +IDRFVRI RNL HYYSGS
Sbjct:  293 LMNKWKYYLVHLWQCHFYVWSEPGRIHINQL--SKHSLFFLGYLSSMRLNLSVVRSQMLENSFLMDNAMKKIDTLVPISPLIGSLAKMKFCNALGHPISKSTWADSSDLDIIDRFVRIWRNLFHYYSGS 419

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CRAMN (Maturase K OS=Crataegus monogyna GN=matK PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.412e-47
Identity = 89/129 (68.99%), Postives = 104/129 (80.62%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ H    SQPGR+ +N L   K++++FLGY S +R N  +VR QMLENSF++DN+MKK+DT VPII LIGSL K +FCNALGHPISKSTW+D SD  +IDRFV ICRNLSHYYSGS
Sbjct:  294 LMNKWKYYLVNLWQCHSYVWSQPGRIYINQL--SKHSLDFLGYFSSMRPNLSVVRGQMLENSFIMDNAMKKLDTLVPIIPLIGSLAKVKFCNALGHPISKSTWADSSDFDIIDRFVHICRNLSHYYSGS 420

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_RHOSC (Maturase K OS=Rhodotypos scandens GN=matK PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.099e-46
Identity = 89/129 (68.99%), Postives = 105/129 (81.40%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+NKWKYYLV LWQ H    SQPG + +N L   K++++FLGY S +R N  +VRSQMLENSF++DN+MKK+DT VPII LIGSL K +FCNALGHPISKSTW+D SD  +IDRFVRICRNLSHYYSGS
Sbjct:  294 LINKWKYYLVNLWQCHSYVWSQPGTIYINQL--SKHSLDFLGYFSSMRPNLSVVRSQMLENSFIMDNAMKKLDTLVPIIPLIGSLAKVKFCNALGHPISKSTWADSSDFDIIDRFVRICRNLSHYYSGS 420

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CALPO (Maturase K OS=Callistemon polandii GN=matK PE=3 SV=4)

HSP 1 Score: 184.882 bits (468), Expect = 1.099e-46
Identity = 92/129 (71.32%), Postives = 106/129 (82.17%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF A  QPGR+ +N L   KY+++FLGY   VRLNS +VRSQMLENSFLI+N+MKK +T VPII LIGSL+KA FCN LGHPISK T +D SDS +IDRF+RICRNLSHY+SGS
Sbjct:  291 LMNKWKYYLVNLWQYHFYAWFQPGRIDINQLC--KYSLDFLGYRLSVRLNSSVVRSQMLENSFLINNTMKKFETIVPIIPLIGSLSKANFCNTLGHPISKPTRADSSDSDIIDRFLRICRNLSHYHSGS 417

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ANEAN (Maturase K OS=Anetholea anisata GN=matK PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.099e-46
Identity = 92/129 (71.32%), Postives = 107/129 (82.95%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF A  QPGR+ +N L   KY+++FLGY S VRLNS +VRSQ+LENSFLI+N+MKK +T VPII LIGSL+KA FCN LGHPISK T +D SDS +IDRF+RICRNLSHY+SGS
Sbjct:  291 LMNKWKYYLVTLWQYHFYAWFQPGRIDINQLC--KYSLDFLGYRSSVRLNSSVVRSQILENSFLINNAMKKFETIVPIIPLIGSLSKANFCNTLGHPISKPTRADSSDSDIIDRFLRICRNLSHYHSGS 417

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MALDO (Maturase K OS=Malus domestica GN=matK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.874e-46
Identity = 88/129 (68.22%), Postives = 104/129 (80.62%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ H    SQPGR+ +N L   K++++FLGY S +R N  +VR QMLENSF++DN+MKK+DT VPII LIGSL K +FCNALGHPISKSTW+D SD  +IDRF+ ICRNLSHYYSGS
Sbjct:  292 LMNKWKYYLVNLWQCHSYVWSQPGRIYINQL--SKHSLDFLGYFSSMRPNLSVVRGQMLENSFIMDNAMKKLDTLVPIIPLIGSLAKVKFCNALGHPISKSTWADSSDFDIIDRFLHICRNLSHYYSGS 418

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_BACCT (Maturase K OS=Backhousia citriodora GN=matK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.874e-46
Identity = 92/129 (71.32%), Postives = 106/129 (82.17%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF A  QPGR+ +N L   KY+++FLGY S VRLNS +VRSQMLEN FLI+N+MKK +T VPII LIGSL+KA FCN LGHPISK T SD SDS +I+RF+RICRNLSHY+SGS
Sbjct:  291 LMNKWKYYLVNLWQYHFYAWFQPGRININQLC--KYSLDFLGYRSSVRLNSSVVRSQMLENLFLINNAMKKFETIVPIIPLIGSLSKANFCNTLGHPISKPTRSDSSDSDIINRFLRICRNLSHYHSGS 417

The following BLAST results are available for this feature:

BLAST of CB305000 vs. ExPASy Swiss-Prot

BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
MATK_PRUDU	2.214e-47	69.77	Maturase K OS=Prunus dulcis GN=matK PE=3 SV=1	[more]
MATK_VITVI	3.776e-47	68.99	Maturase K OS=Vitis vinifera GN=matK PE=3 SV=1	[more]
MATK_SYZAU	3.776e-47	72.09	Maturase K OS=Syzygium australe GN=matK PE=3 SV=1	[more]
MATK_ULMPA	8.412e-47	70.54	Maturase K OS=Ulmus parvifolia GN=matK PE=3 SV=1	[more]
MATK_CRAMN	8.412e-47	68.99	Maturase K OS=Crataegus monogyna GN=matK PE=3 SV=1	[more]
MATK_RHOSC	1.099e-46	68.99	Maturase K OS=Rhodotypos scandens GN=matK PE=3 SV=...	[more]
MATK_CALPO	1.099e-46	71.32	Maturase K OS=Callistemon polandii GN=matK PE=3 SV...	[more]
MATK_ANEAN	1.099e-46	71.32	Maturase K OS=Anetholea anisata GN=matK PE=3 SV=1	[more]
MATK_MALDO	1.874e-46	68.22	Maturase K OS=Malus domestica GN=matK PE=3 SV=1	[more]
MATK_BACCT	1.874e-46	71.32	Maturase K OS=Backhousia citriodora GN=matK PE=3 S...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA