CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_TRIFG (Maturase K OS=Trigonella foenum-graecum GN=matK PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.590e-37
Identity = 75/129 (58.14%), Postives = 93/129 (72.09%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+Y + LWQG F   SQP  + +N L   +++   LGY   VRLN  +VRSQML+N+FLI+   KK+D  VPI+ LI SL KA+FCN LG PISK  W+D SD  +IDRF+RICRNLSHYY+GS
Sbjct:  293 LMNKWKHYFIHLWQGFFDVWSQPRTININQL--SEHSFQLLGYFLNVRLNRSVVRSQMLQNTFLIEIVSKKLDIIVPIMPLIRSLAKAKFCNVLGPPISKPVWADSSDFDIIDRFLRICRNLSHYYNGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_VICSA (Maturase K OS=Vicia sativa GN=matK PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.077e-37
Identity = 75/129 (58.14%), Postives = 94/129 (72.87%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK++ + LWQ  F   SQP  + +N L   +++   LGY S VRLN  +VRSQML+N+FLI+  +KK+D  VPII LI SL KA+FCN LG PISK  W+D SD  +IDRF+RICRNLSHYY+GS
Sbjct:  290 LMNKWKHFFIHLWQCFFDVWSQPRMININPL--SEHSFQLLGYFSNVRLNRSVVRSQMLQNTFLIEIVIKKLDITVPIIPLIRSLAKAKFCNVLGQPISKPVWADSSDFDIIDRFLRICRNLSHYYNGS 416          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_SALKA (Maturase K OS=Salsola kali GN=matK PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.077e-37
Identity = 73/129 (56.59%), Postives = 95/129 (73.64%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L++KWKYYL+  WQ  F    QP R+ +N L    ++++F+G+LS VR+NS ++RSQM +NSFLI+N +KK D  VPII L+GSL KA+FCN LG PISKS W+D SDS +IDRF  ICR +SH  SGS
Sbjct:  293 LIHKWKYYLIYFWQCDFSVWXQPRRIYINRL--SNHSLDFMGFLSSVRMNSSVIRSQMSQNSFLIENIIKKFDXIVPIIPLVGSLAKAKFCNVLGPPISKSAWTDLSDSEIIDRFGHICRKVSHXXSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_GAUPR (Maturase K OS=Gaultheria procumbens GN=matK PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.077e-37
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWKYY+V  W+ +F   +QP R+ +N L     +++FLGYLS +RL   +VRSQM+ENSFLI+N+ KK DT VPI  +I SL+KA+FCN LG P+SK  W   SDS +I+RF RI RNLSHYYSGS
Sbjct:  294 LMDKWKYYVVNFWECYFYIWAQPRRIHINQL--SNNSLDFLGYLSSIRLKPSMVRSQMIENSFLIENASKKFDTLVPITPMIESLSKAKFCNVLGQPMSKPVWGGLSDSDIIERFGRIYRNLSHYYSGS 420          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_AVESA (Maturase K OS=Avena sativa GN=matK PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.077e-37
Identity = 78/129 (60.47%), Postives = 92/129 (71.32%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L  KWK+YL+ LWQ  F   +QP RV LN L       +FLGYLSGV  +SLLVR+QMLEN FLID  MKK+DT VP+  LIG L+KA+FC   GHPISK  W+D SD  ++DRF RICRNL HY+SGS
Sbjct:  297 LNKKWKWYLINLWQYLFSFWTQPRRVHLNQL--ANSCFDFLGYLSGVPKSSLLVRNQMLENLFLIDTRMKKLDTIVPVTALIGYLSKAQFCTGSGHPISKPIWTDLSDWDILDRFGRICRNLFHYHSGS 423          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ANNMU (Maturase K OS=Annona muricata GN=matK PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.077e-37
Identity = 79/128 (61.72%), Postives = 89/128 (69.53%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            M KWK YLV  WQ HF   SQP R+ +N LY   ++  F+ YL  VR NS  VRSQMLENSFLID S+KK +T VP I LIG L KA+FCN  GHPISK   +D SDS +I RF RI RNLSHYYSGS
Sbjct:  296 MKKWKSYLVHFWQSHFYLWSQPNRIHINQLY--NHSFYFMSYLLSVRQNSSAVRSQMLENSFLIDTSIKKFETLVPTIPLIGLLAKAKFCNVFGHPISKPARADSSDSDIISRFGRIYRNLSHYYSGS 421          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_AMOBY (Maturase K OS=Amorphophallus abyssinicus GN=matK PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.077e-37
Identity = 75/129 (58.14%), Postives = 90/129 (69.77%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWK Y V  WQ HF   SQP R+ +N      ++  FLGYLS V +N   V+SQMLEN FL+D   KK +T VPII +IG+L+KA+FCN  G+PISK  W+D SDS +IDRF R CRNLSHYYSGS
Sbjct:  300 LMKKWKSYFVNFWQCHFHFWSQPCRIHINQF--SNFSFYFLGYLSSVPINPSAVKSQMLENFFLVDTVTKKFETIVPIIPMIGALSKAKFCNVSGNPISKPVWADLSDSDIIDRFGRTCRNLSHYYSGS 426          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_VACVI (Maturase K OS=Vaccinium vitis-idaea GN=matK PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.712e-37
Identity = 73/129 (56.59%), Postives = 93/129 (72.09%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  W+ +F   +QP R+ +N L     + +FLGYLS VRL   +VR+QM+ENSFLI+N+ KK DT VPI  +I SL+KA+FCN LGHP++K  W   SDS +I+R  R+  NLSHYYSGS
Sbjct:  290 LMNKWKYYLVNFWECYFSIWAQPRRIHINQL--SNNSFDFLGYLSSVRLKPSMVRTQMIENSFLIENASKKFDTLVPITPMIASLSKAKFCNVLGHPMNKXVWDGLSDSDIIERIGRLYXNLSHYYSGS 416          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_TRILP (Maturase K OS=Trifolium lupinaster GN=matK PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.712e-37
Identity = 75/129 (58.14%), Postives = 92/129 (71.32%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWK+Y + LWQ  F   SQP  + +N L   +++   LGY S VRLN   VRSQML+N+FLI+   KK+D  VPII LI SL KA+FCN LGHPISK  W+D SD  +I+RF+RICRNLSHYY+GS
Sbjct:  293 LMKKWKHYFIHLWQCFFDVWSQPRTININQL--SEHSFRLLGYFSNVRLNRSAVRSQMLQNTFLIEIVSKKLDIIVPIIPLIRSLAKAKFCNVLGHPISKPVWADSSDFDIIERFLRICRNLSHYYNGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ASPEL (Maturase K OS=Aspidistra elatior GN=matK PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.712e-37
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY+    WQ +F   SQP R+ +N L    Y+  FLGYLS + L+   VR+QMLENSFLI+   KK DT VP+I LIGSL KA+FC   GHPISK  W+D SDS +++RF RICRNLSHY+SGS
Sbjct:  307 LMKKWKYHFFNFWQYYFHVWSQPYRIHINQL--SNYSFYFLGYLSSLLLHFSAVRNQMLENSFLINTITKKFDTIVPVIFLIGSLAKAKFCTVSGHPISKPIWTDLSDSDILNRFGRICRNLSHYHSGS 433          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_TRIFG1.590e-3758.14Maturase K OS=Trigonella foenum-graecum GN=matK PE... [more]
MATK_VICSA2.077e-3758.14Maturase K OS=Vicia sativa GN=matK PE=3 SV=1[more]
MATK_SALKA2.077e-3756.59Maturase K OS=Salsola kali GN=matK PE=3 SV=1[more]
MATK_GAUPR2.077e-3757.36Maturase K OS=Gaultheria procumbens GN=matK PE=3 S... [more]
MATK_AVESA2.077e-3760.47Maturase K OS=Avena sativa GN=matK PE=3 SV=1[more]
MATK_ANNMU2.077e-3761.72Maturase K OS=Annona muricata GN=matK PE=3 SV=1[more]
MATK_AMOBY2.077e-3758.14Maturase K OS=Amorphophallus abyssinicus GN=matK P... [more]
MATK_VACVI2.712e-3756.59Maturase K OS=Vaccinium vitis-idaea GN=matK PE=3 S... [more]
MATK_TRILP2.712e-3758.14Maturase K OS=Trifolium lupinaster GN=matK PE=3 SV... [more]
MATK_ASPEL2.712e-3758.14Maturase K OS=Aspidistra elatior GN=matK PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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