CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1946 contig Csv1_Contig1946:641..1059. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MEDSA (Maturase K OS=Medicago sativa GN=matK PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+Y + LWQG F   SQP  + +N L   +++   LGY   VR+N  +VRSQML+N+FLI+   KK+D  VPII LI SL KA+FCN LG  ISK  W+D SD  +IDRF+ ICRNLSHYY+GS
Sbjct:  293 LMNKWKHYFIHLWQGFFYVWSQPRTIHINQL--SEHSFQLLGYFLNVRVNRSVVRSQMLQNTFLIEIFSKKLDIIVPIIPLIRSLAKAKFCNVLGPLISKPVWADSSDFDIIDRFLXICRNLSHYYNGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_HORVU (Maturase K OS=Hordeum vulgare GN=matK PE=2 SV=4)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 74/129 (57.36%), Postives = 88/129 (68.22%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L  KWK YL+  WQ +F   +QP R+ +N L       +F+GYLS V  + LLVR+QMLENSFLID  MKK DT VP   LIG L+KA+FC   GHPISK  W+D SD  ++DRF RICRNL HYYSGS
Sbjct:  297 LKKKWKCYLINFWQYYFFFWTQPRRIHINQL--ANSCFDFMGYLSSVPKSPLLVRNQMLENSFLIDTRMKKFDTIVPATLLIGYLSKAQFCTGSGHPISKPIWTDLSDWDILDRFGRICRNLFHYYSGS 423          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ARIGL (Maturase K OS=Aristea glauca GN=matK PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY+ V  WQ +F    Q  R+ +N L     +  FLGYLS +   S  VR+QMLENSFLID  + K DTAVP+I LIG+L+KA FC   GHPISK  W+D SDS++I+RF RICRNLSHY+SGS
Sbjct:  309 LMKKWKYHFVNFWQYNFHFWYQSYRIHINQL--SNCSFYFLGYLSSLLKKSSTVRNQMLENSFLIDTIITKFDTAVPVIFLIGALSKAPFCTVSGHPISKPIWTDLSDSYIIERFGRICRNLSHYHSGS 435          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ZINOF (Maturase K OS=Zingiber officinale GN=matK PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 72/129 (55.81%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY+LV  WQ +F   SQP R+ +  L    Y+  FLGY S V++NS +VR+QMLENSFL+D   KK DT +PII LI SL KA+FC   G+PISK  W+D +D  +I+RF RICR L+HY+SGS
Sbjct:  298 LMKKWKYHLVNFWQYYFHFWSQPYRIDIKKL--SNYSFYFLGYFSSVQINSSMVRNQMLENSFLMDTLTKKFDTIIPIIPLIRSLFKAQFCTVSGYPISKPIWTDLADCDIINRFGRICRKLTHYHSGS 424          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_POAPR (Maturase K OS=Poa pratensis GN=matK PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 73/126 (57.94%), Postives = 88/126 (69.84%), Query Frame = -1
Query:   33 KWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 410
            KWK+YL+ LWQ  F   +QP R+ LN L       +F+GYLS V  + LLVR+QMLENSFLID  M K DT VP+  LIG L+KA+FC   GHPISK  W+D SD  ++DRF RICRNL HY+SGS
Sbjct:  300 KWKWYLIHLWQYFFSFWTQPRRIHLNQL--ANSCFDFMGYLSSVPKSPLLVRNQMLENSFLIDTRMPKFDTIVPVTALIGYLSKAQFCTGSGHPISKPIWTDLSDWDILDRFGRICRNLFHYHSGS 423          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PARTT (Maturase K OS=Paris tetraphylla GN=matK PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 71/129 (55.04%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+ KWK YLV  WQ +    S+P R+ +N      Y+  FLGY+S V +N   V++QMLEN +L+D   +K DT VP+I LIGSL+KA+FC  LGHPISK  W++ SDS +IDRF RICRNLSHY+SGS
Sbjct:  301 LIKKWKCYLVNFWQYNLNFWSKPYRIHINPF--SNYSFYFLGYISSVLINPSAVKNQMLENFYLVDTLTQKFDTIVPVIPLIGSLSKAKFCTILGHPISKPIWAELSDSDIIDRFGRICRNLSHYHSGS 427          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_NARST (Maturase K OS=Nardus stricta GN=matK PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 76/129 (58.91%), Postives = 87/129 (67.44%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L  KWK YLV  WQ  F    QP R+QLN L       +FLGYLS V  + LLVR+QMLENSFLI   +KK DT  P I LIGSL+KA+FC   GHPISK  W+D SD  ++DRF RICRNL HY+SGS
Sbjct:  297 LRKKWKCYLVNFWQYSFSFWIQPRRIQLNKL--ANSCFDFLGYLSSVPQSPLLVRNQMLENSFLITTRIKKFDTIAPAISLIGSLSKAQFCTGSGHPISKPIWTDLSDWDILDRFGRICRNLFHYHSGS 423          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LAPNE (Maturase K OS=Lapeirousia neglecta GN=matK PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 75/129 (58.14%), Postives = 90/129 (69.77%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY  V LWQ +F    Q  R+ +N L    ++  FLGYLS +  NS  VR+QML+NSFLID    K DTAVP+I LI SL+KA+FC   GHPISK  W+D SDS +I+RF RICRNLSHY+SGS
Sbjct:  309 LMKKWKYNFVNLWQYYFHFWYQSYRIHINQL--SNHSFYFLGYLSSLLKNSSTVRNQMLDNSFLIDTLTTKFDTAVPVIFLIVSLSKAQFCTVSGHPISKPIWTDLSDSGIIERFGRICRNLSHYHSGS 435          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_FAGES (Maturase K OS=Fagopyrum esculentum GN=matK PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 74/129 (57.36%), Postives = 89/129 (68.99%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM K+KYY V  WQ HF    Q  R+ +N        I+F+G+   VRLN  +VRSQMLEN+FLI N +KK +T VP + LIGSL K +FCN LGHPISK  W+D SDS +I RF R+CRNLSHYYSGS
Sbjct:  294 LMTKFKYYFVNFWQCHFYLWLQTRRIYINKSL--NQPIDFIGFRLSVRLNPSVVRSQMLENAFLIYNGIKKFETLVPTMSLIGSLAKEKFCNVLGHPISKPAWADLSDSDIIRRFGRMCRNLSHYYSGS 420          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_FAGEA (Maturase K OS=Fagopyrum esculentum subsp. ancestrale GN=matK PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 74/129 (57.36%), Postives = 89/129 (68.99%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM K+KYY V  WQ HF    Q  R+ +N        I+F+G+   VRLN  +VRSQMLEN+FLI N +KK +T VP + LIGSL K +FCN LGHPISK  W+D SDS +I RF R+CRNLSHYYSGS
Sbjct:  294 LMTKFKYYFVNFWQCHFYLWLQTRRIYINKSL--NQPIDFIGFRLSVRLNPSVVRSQMLENAFLIYNGIKKFETLVPTMSLIGSLAKEKFCNVLGHPISKPAWADLSDSDIIRRFGRMCRNLSHYYSGS 420          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_MEDSA1.944e-3556.59Maturase K OS=Medicago sativa GN=matK PE=3 SV=2[more]
MATK_HORVU1.944e-3557.36Maturase K OS=Hordeum vulgare GN=matK PE=2 SV=4[more]
MATK_ARIGL1.944e-3557.36Maturase K OS=Aristea glauca GN=matK PE=3 SV=1[more]
MATK_ZINOF2.539e-3555.81Maturase K OS=Zingiber officinale GN=matK PE=3 SV=... [more]
MATK_POAPR2.539e-3557.94Maturase K OS=Poa pratensis GN=matK PE=3 SV=1[more]
MATK_PARTT2.539e-3555.04Maturase K OS=Paris tetraphylla GN=matK PE=3 SV=1[more]
MATK_NARST2.539e-3558.91Maturase K OS=Nardus stricta GN=matK PE=3 SV=1[more]
MATK_LAPNE2.539e-3558.14Maturase K OS=Lapeirousia neglecta GN=matK PE=3 SV... [more]
MATK_FAGES2.539e-3557.36Maturase K OS=Fagopyrum esculentum GN=matK PE=3 SV... [more]
MATK_FAGEA2.539e-3557.36Maturase K OS=Fagopyrum esculentum subsp. ancestra... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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