CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1946 contig Csv1_Contig1946:641..1059. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CARPA (Maturase K OS=Carica papaya GN=matK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.121e-46
Identity = 89/129 (68.99%), Postives = 102/129 (79.07%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYY V LWQ HF   SQ  RV++  L   K  ++FLGY S +R N L+VRSQMLENSFLIDN++KK DT +PII +IGSL KARFCNALGHPISK  W+D +DS +IDRFVRICRNLSHYYSGS
Sbjct:  294 LMNKWKYYFVSLWQCHFYVWSQSRRVRIKQL--SKDYLDFLGYFSSLRFNPLVVRSQMLENSFLIDNAIKKFDTKIPIIPMIGSLAKARFCNALGHPISKPAWADSADSDIIDRFVRICRNLSHYYSGS 420          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CALPE (Maturase K OS=Calyptranthes pallens GN=matK PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 7.121e-46
Identity = 90/128 (70.31%), Postives = 105/128 (82.03%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWKYYLV LWQ HF A  QPGR+ +N L    Y+I+FLGY S VRLNS +VRSQMLENSF+I+N++KK +T VPII LIGSL+KA FCN LGHPISK T +D SDS +IDRF+RICRNLSHY+SGS
Sbjct:  293 MNKWKYYLVNLWQYHFYAWFQPGRININQLC--NYSIDFLGYRSSVRLNSSVVRSQMLENSFIINNAIKKFETIVPIIPLIGSLSKANFCNTLGHPISKPTRADSSDSDIIDRFLRICRNLSHYHSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_HYDMC (Maturase K OS=Hydrangea macrophylla GN=matK PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.300e-46
Identity = 88/129 (68.22%), Postives = 102/129 (79.07%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQP  + +N L    ++++FLGYLS VRLN  +VRSQMLENS+LIDN++KK DT VPII LIGSL KA+FCN LGHPISK  W+D SDS +IDRF RICRNLSHY+SGS
Sbjct:  292 LMNKWKYYLVNCWQCHFYVWSQPRSIYINQL--SNHSLHFLGYLSSVRLNPSMVRSQMLENSYLIDNAIKKFDTIVPIIPLIGSLAKAKFCNVLGHPISKPVWADLSDSDIIDRFGRICRNLSHYHSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_GOSSC (Maturase K OS=Gossypium schwendimanii GN=matK PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.300e-46
Identity = 88/129 (68.22%), Postives = 106/129 (82.17%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+NKWKYY V LWQ +F   SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSFLIDN++K +DT +PII +IGSL+KA+FCN LGHPISK TW+D  DS +IDRFVRI RNLSHY+SGS
Sbjct:  290 LINKWKYYFVDLWQYYFYLWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFLIDNAVKTLDTRIPIISIIGSLSKAKFCNTLGHPISKPTWADSPDSDIIDRFVRISRNLSHYHSGS 416          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_GOSGO (Maturase K OS=Gossypium gossypioides GN=matK PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.300e-46
Identity = 88/129 (68.22%), Postives = 106/129 (82.17%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+NKWKYY V LWQ +F   SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSFLIDN++K +DT +PII +IGSL+KA+FCN LGHPISK TW+D  DS +IDRFVRI RNLSHY+SGS
Sbjct:  290 LINKWKYYFVDLWQYYFYLWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFLIDNAVKTLDTRIPIISIIGSLSKAKFCNTLGHPISKPTWADSPDSDIIDRFVRISRNLSHYHSGS 416          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ARUDI (Maturase K OS=Aruncus dioicus GN=matK PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.300e-46
Identity = 86/129 (66.67%), Postives = 105/129 (81.40%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            +MNKWKYYLV LWQ H+   SQPGR+ +N L   K+++ FLGY + ++ N  +VRSQMLENSF++DN+MKK+DT VPII LI SL K +FCNALGHPISKSTW+D SD  +IDRFVRICRN+SHYYSGS
Sbjct:  292 MMNKWKYYLVNLWQCHYYVWSQPGRIYINQL--SKHSLYFLGYFASMQPNLSVVRSQMLENSFIMDNAMKKLDTLVPIIPLIVSLAKVKFCNALGHPISKSTWTDSSDFDIIDRFVRICRNISHYYSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PHASI (Maturase K OS=Phaulothamnus spinescens GN=matK PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.586e-45
Identity = 85/129 (65.89%), Postives = 103/129 (79.84%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWKYYL+  WQ HF   SQP R+ +N L    ++++F+G+ S VRLNS +VRSQMLENSFLIDN++ K DT +PII LIGSL KA+FCN LGHPISKS W+D SDS +IDRF RIC+NLSHYYSGS
Sbjct:  293 LMHKWKYYLIHFWQCHFSVWSQPRRIYINRL--SNHSLDFMGFFSSVRLNSSVVRSQMLENSFLIDNTIMKFDTIIPIIPLIGSLAKAKFCNVLGHPISKSVWTDLSDSDIIDRFGRICKNLSHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_GOSBA (Maturase K OS=Gossypium barbadense GN=matK PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.586e-45
Identity = 88/129 (68.22%), Postives = 106/129 (82.17%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+NKWKYY V LWQ +F   SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQ+LENSFLIDN++K +DT +PII LIGSL+KA+FCN LGHPISK TW+D  DS +IDRFVRI RNLSHY+SGS
Sbjct:  290 LINKWKYYFVDLWQYYFYLWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQVLENSFLIDNAVKTLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSPDSDIIDRFVRISRNLSHYHSGS 416          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_DIOVR (Maturase K OS=Diospyros virginiana GN=matK PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.586e-45
Identity = 89/129 (68.99%), Postives = 102/129 (79.07%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ +F   SQPGR+  NHL    ++++FLGYLS VRLN  +VRSQMLENSFLI N++KK D  VPII L+GSL+KA+FCN LGHPISK  WSD SDS +IDRF RI RNLSHYYSGS
Sbjct:  292 LMNKWKYYLVNFWQCYFYMWSQPGRIHRNHL--SNHSLDFLGYLSSVRLNPSIVRSQMLENSFLIGNAIKKYDPIVPIIPLMGSLSKAKFCNVLGHPISKPVWSDLSDSDIIDRFGRIYRNLSHYYSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_THRSA (Maturase K OS=Thryptomene saxicola GN=matK PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.072e-45
Identity = 88/128 (68.75%), Postives = 104/128 (81.25%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWKYYLV LWQ HF A  +PGR+ +N L+  KY+++FLGY S VRLNS +VRSQML+N FLI+N+MKK +T VPII LIGSL KA FCN  GHPISK T +D SDS +IDRF+RICRNLSHY+SGS
Sbjct:  292 MNKWKYYLVNLWQYHFYAWFKPGRIDINQLF--KYSLDFLGYRSNVRLNSSVVRSQMLZNLFLINNAMKKFETIVPIIPLIGSLYKANFCNTFGHPISKPTRTDSSDSDIIDRFLRICRNLSHYHSGS 417          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_CARPA7.121e-4668.99Maturase K OS=Carica papaya GN=matK PE=3 SV=1[more]
MATK_CALPE7.121e-4670.31Maturase K OS=Calyptranthes pallens GN=matK PE=3 S... [more]
MATK_HYDMC9.300e-4668.22Maturase K OS=Hydrangea macrophylla GN=matK PE=3 S... [more]
MATK_GOSSC9.300e-4668.22Maturase K OS=Gossypium schwendimanii GN=matK PE=3... [more]
MATK_GOSGO9.300e-4668.22Maturase K OS=Gossypium gossypioides GN=matK PE=3 ... [more]
MATK_ARUDI9.300e-4666.67Maturase K OS=Aruncus dioicus GN=matK PE=3 SV=1[more]
MATK_PHASI1.586e-4565.89Maturase K OS=Phaulothamnus spinescens GN=matK PE=... [more]
MATK_GOSBA1.586e-4568.22Maturase K OS=Gossypium barbadense GN=matK PE=3 SV... [more]
MATK_DIOVR1.586e-4568.99Maturase K OS=Diospyros virginiana GN=matK PE=3 SV... [more]
MATK_THRSA2.072e-4568.75Maturase K OS=Thryptomene saxicola GN=matK PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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