CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1946 contig Csv1_Contig1946:641..1059. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_RUBUR (Maturase K OS=Rubus ursinus GN=matK PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.706e-45
Identity = 87/129 (67.44%), Postives = 104/129 (80.62%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ +F   SQPGR+ +N L   K++++FLGYLS +R N  +VRSQ+LENSFL+DN+MKK+DT VPII +IGSL K +FCN LGHPISKSTW+D SDS +IDRFVRI  NL HYYSGS
Sbjct:  291 LMNKWKYYLVNFWQCNFYVWSQPGRIHINQL--SKHSLDFLGYLSSIRPNISVVRSQLLENSFLMDNAMKKLDTLVPIIPMIGSLAKVKFCNTLGHPISKSTWADSSDSDIIDRFVRIGGNLFHYYSGS 417          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_FICCA (Maturase K OS=Ficus carica GN=matK PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.706e-45
Identity = 86/128 (67.19%), Postives = 103/128 (80.47%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKW+YYLV LWQ HF   SQPGR+ +N L   K++++FLGYLS +++N  +VRSQMLENSFL+DN+MKK+DT VPI  LIGSL K RFCN LGHP+SKSTW+D SD  +IDRF  ICRNL HYYSGS
Sbjct:  294 MNKWRYYLVLLWQCHFSVWSQPGRMYINQLC--KHSLSFLGYLSNMQINLSVVRSQMLENSFLMDNAMKKIDTLVPISPLIGSLAKMRFCNVLGHPVSKSTWADSSDFDIIDRFAYICRNLFHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ADEFA (Maturase K OS=Adenostoma fasciculatum GN=matK PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.706e-45
Identity = 89/129 (68.99%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ H    SQPGR+ +N L   K++I FLGY S +R N  +VRSQMLENSF++DN+MKK DT VPII LI SL K +FCN LGHPISKS W+D SD  +IDRFVRICRNLSHYYSGS
Sbjct:  292 LMNKWKYYLVNLWQCHSYVWSQPGRICINQL--SKHSIYFLGYFSSMRPNLSVVRSQMLENSFIMDNAMKKFDTLVPIIPLIRSLAKVKFCNTLGHPISKSAWADSSDFDIIDRFVRICRNLSHYYSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_STEPS (Maturase K OS=Stewartia pseudocamellia GN=matK PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.534e-45
Identity = 87/129 (67.44%), Postives = 104/129 (80.62%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKW+YYLV  WQ +F   SQPGR+ +N L   K++++FLGYLS VRLN  +VRSQMLENSFLI N++KK DT VPII +IGSL+KA+FCN LGHPISK  W+D SDS +IDRF RI RNLSHY+SGS
Sbjct:  296 LMNKWRYYLVNFWQCYFYIWSQPGRIHINQL--SKHSLDFLGYLSSVRLNPSMVRSQMLENSFLIGNAIKKFDTIVPIIPMIGSLSKAKFCNVLGHPISKPVWADLSDSDIIDRFGRIYRNLSHYHSGS 422          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PELHO (Maturase K OS=Pelargonium hortorum GN=matK PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.534e-45
Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +N L   +++++ LGYL  V  N L+VRSQ+ +NSFLIDN+M K++T +P+  LIGSLTKA+FCN LG PISKSTW+D SDS +IDRFVR+CRNLSHYYSGS
Sbjct:  296 LMNKWKYYLVKLWQCHFYVWSQPGRIHINQL--SQHSLHLLGYLLSVGTNPLVVRSQVFDNSFLIDNAMNKLETRIPLFSLIGSLTKAQFCNPLGQPISKSTWADSSDSDIIDRFVRMCRNLSHYYSGS 422          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MENLA (Maturase K OS=Mentzelia laevicaulis GN=matK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.616e-45
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYL+  WQ HF   SQP R+ +N L    ++++FLGYLS VRLN  +VRSQM+ENSFLIDN++KK DT VPII +I SL KA+FCN LGHPISK  W+D SDS +IDRF RICRNLSHY+SGS
Sbjct:  290 LMNKWKYYLLNCWQCHFYVWSQPRRIYINQL--SNHSLDFLGYLSSVRLNPSMVRSQMIENSFLIDNAIKKFDTIVPIIPMIQSLAKAKFCNVLGHPISKPVWADLSDSDIIDRFGRICRNLSHYHSGS 416          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_FAGJA (Maturase K OS=Fagus japonica GN=matK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.616e-45
Identity = 88/129 (68.22%), Postives = 103/129 (79.84%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   S PGR+ +N L   K++++F GY S VRLN  +VRSQMLENSFLI+N+ KK+D  VPII LIGSL KARFCNALGHPISK T +D SD  +++RF+RICRNLSHYYSGS
Sbjct:  292 LMNKWKYYLVNLWQCHFYVWSHPGRIHINQL--SKHSLDFWGYFSSVRLNPSVVRSQMLENSFLINNAPKKLDIIVPIIPLIGSLAKARFCNALGHPISKLTRADLSDFEILNRFLRICRNLSHYYSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_FAGCR (Maturase K OS=Fagus crenata GN=matK PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.616e-45
Identity = 88/129 (68.22%), Postives = 103/129 (79.84%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   S PGR+ +N L   K++++F GY S VRLN  +VRSQMLENSFLI+N+ KK+D  VPII LIGSL KARFCNALGHPISK T +D SD  +++RF+RICRNLSHYYSGS
Sbjct:  292 LMNKWKYYLVNLWQCHFYVWSHPGRIHINQL--SKHSLDFWGYFSSVRLNPSVVRSQMLENSFLINNAPKKLDIIVPIIPLIGSLAKARFCNALGHPISKLTRADLSDFEILNRFLRICRNLSHYYSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_AMAGR (Maturase K OS=Amaranthus greggii GN=matK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.616e-45
Identity = 83/129 (64.34%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKYY +  WQ HF   SQP R+ +N L    Y+++F+G++S V LNS ++RSQMLENSFL+DN +KK DT VPII L+GSL KA+FCN LGHPISKS W+D SD+ +IDRF RICRNLSHYYSGS
Sbjct:  293 LMYKWKYYFIAFWQCHFSVWSQPRRIYINQL--SNYSLDFMGFISNVGLNSSVIRSQMLENSFLVDNIIKKFDTIVPIIPLVGSLAKAKFCNGLGHPISKSVWTDLSDADIIDRFGRICRNLSHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_RHACA (Maturase K OS=Rhamnus cathartica GN=matK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.028e-45
Identity = 86/129 (66.67%), Postives = 103/129 (79.84%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   +QPGR+ +N L+  K++  FLGYLS VR N  LVRSQ LENSF++DN++KK+DT  PI  LIGSL K +FC+ALGHP+SKSTW+D SD  +I+RF RICRNLSHYYSGS
Sbjct:  291 LMNKWKYYLVHLWQWHFYVWAQPGRIYINLLF--KHSFGFLGYLSSVRQNLSLVRSQTLENSFIMDNAIKKLDTLAPISPLIGSLAKMQFCSALGHPVSKSTWTDSSDFSIINRFARICRNLSHYYSGS 417          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_RUBUR2.706e-4567.44Maturase K OS=Rubus ursinus GN=matK PE=3 SV=1[more]
MATK_FICCA2.706e-4567.19Maturase K OS=Ficus carica GN=matK PE=3 SV=1[more]
MATK_ADEFA2.706e-4568.99Maturase K OS=Adenostoma fasciculatum GN=matK PE=3... [more]
MATK_STEPS3.534e-4567.44Maturase K OS=Stewartia pseudocamellia GN=matK PE=... [more]
MATK_PELHO3.534e-4565.89Maturase K OS=Pelargonium hortorum GN=matK PE=3 SV... [more]
MATK_MENLA4.616e-4566.67Maturase K OS=Mentzelia laevicaulis GN=matK PE=3 S... [more]
MATK_FAGJA4.616e-4568.22Maturase K OS=Fagus japonica GN=matK PE=3 SV=1[more]
MATK_FAGCR4.616e-4568.22Maturase K OS=Fagus crenata GN=matK PE=3 SV=2[more]
MATK_AMAGR4.616e-4564.34Maturase K OS=Amaranthus greggii GN=matK PE=3 SV=1[more]
MATK_RHACA6.028e-4566.67Maturase K OS=Rhamnus cathartica GN=matK PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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