CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1946 contig Csv1_Contig1946:641..1059. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_GLETR (Maturase K OS=Gleditsia triacanthos GN=matK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.028e-44
Identity = 84/128 (65.62%), Postives = 101/128 (78.91%), Query Frame = -1 
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWKYYL+ LWQ HF   SQPG++ +N L   +++  FLGY S VRLN  +VRSQMLENSF+I+N MKK+DT +PII LI SL KA+FCN LGHPISK  W+D SD  +IDRF+RICRNLSHYY+GS
Sbjct:  293 MNKWKYYLIHLWQCHFYVWSQPGKIHINQL--SEHSFYFLGYFSNVRLNPSVVRSQMLENSFIIENVMKKLDTTIPIIPLIRSLAKAKFCNVLGHPISKPVWADSSDFDIIDRFLRICRNLSHYYNGS 418
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ACTCH (Maturase K OS=Actinidia chinensis GN=matK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.028e-44
Identity = 87/129 (67.44%), Postives = 102/129 (79.07%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ +F    QPGR+Q+N L    ++++FLGYLS VRLN  +VRSQMLENSFLI N++KK DT VPII LIGSL KA+FCN LGHP+SK  W+D SDS +IDRF RI RNLSHY+SGS
Sbjct:  292 LMNKWKYYLVNFWQCYFYMWCQPGRIQINQL--SNHSLDFLGYLSSVRLNPSMVRSQMLENSFLIGNAIKKFDTIVPIIPLIGSLYKAKFCNVLGHPVSKPVWADLSDSDIIDRFGRIYRNLSHYHSGS 418
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ROSMU (Maturase K OS=Rosa multiflora GN=matK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ +N L   K++ +FLGYLS +R N  +VRSQ+LENSFL+DN+MKK+DT  PII +IGSL K +FCN  GHPISKS+W+D SDS +IDRFVRI  NLSHYYSGS
Sbjct:  291 LMNKWKYYLVHFWQCHFYVWSQPGRIHINQL--SKHSFDFLGYLSSIRPNISVVRSQLLENSFLMDNAMKKLDTLFPIIPMIGSLAKVKFCNTSGHPISKSSWADSSDSDIIDRFVRIGGNLSHYYSGS 417
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ROSGI (Maturase K OS=Rosa gigantea GN=matK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ +N L   K++ +FLGYLS +R N  +VRSQ+LENSFL+DN+MKK+DT  PII +IGSL K +FCN  GHPISKS+W+D SDS +IDRFVRI  NLSHYYSGS
Sbjct:  291 LMNKWKYYLVHFWQCHFYVWSQPGRIHINQL--SKHSFDFLGYLSSIRPNISVVRSQLLENSFLMDNAMKKLDTLFPIIPMIGSLAKVKFCNTSGHPISKSSWADSSDSDIIDRFVRIGGNLSHYYSGS 417
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ROSCN (Maturase K OS=Rosa canina GN=matK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ +N L   K++ +FLGYLS +R N  +VRSQ+LENSFL+DN+MKK+DT  PII +IGSL K +FCN  GHPISKS+W+D SDS +IDRFVRI  NLSHYYSGS
Sbjct:  291 LMNKWKYYLVHFWQCHFYVWSQPGRIHINQL--SKHSFDFLGYLSSIRPNISVVRSQLLENSFLMDNAMKKLDTLFPIIPMIGSLAKVKFCNTSGHPISKSSWADSSDSDIIDRFVRIGGNLSHYYSGS 417
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ROSCL (Maturase K OS=Rosa californica GN=matK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ +N L   K++ +FLGYLS +R N  +VRSQ+LENSFL+DN+MKK+DT  PII +IGSL K +FCN  GHPISKS+W+D SDS +IDRFVRI  NLSHYYSGS
Sbjct:  291 LMNKWKYYLVHFWQCHFYVWSQPGRIHINQL--SKHSFDFLGYLSSIRPNISVVRSQLLENSFLMDNAMKKLDTLFPIIPMIGSLAKVKFCNTSGHPISKSSWADSSDSDIIDRFVRIGGNLSHYYSGS 417
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ROSCA (Maturase K OS=Rosa carolina GN=matK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ +N L   K++ +FLGYLS +R N  +VRSQ+LENSFL+DN+MKK+DT  PII +IGSL K +FCN  GHPISKS+W+D SDS +IDRFVRI  NLSHYYSGS
Sbjct:  291 LMNKWKYYLVHFWQCHFYVWSQPGRIHINQL--SKHSFDFLGYLSSIRPNISVVRSQLLENSFLMDNAMKKLDTLFPIIPMIGSLAKVKFCNTSGHPISKSSWADSSDSDIIDRFVRIGGNLSHYYSGS 417
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ROSAC (Maturase K OS=Rosa acicularis GN=matK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ +N L   K++ +FLGYLS +R N  +VRSQ+LENSFL+DN+MKK+DT  PII +IGSL K +FCN  GHPISKS+W+D SDS +IDRFVRI  NLSHYYSGS
Sbjct:  291 LMNKWKYYLVHFWQCHFYVWSQPGRIHINQL--SKHSFDFLGYLSSIRPNISVVRSQLLENSFLMDNAMKKLDTLFPIIPMIGSLAKVKFCNTSGHPISKSSWADSSDSDIIDRFVRIGGNLSHYYSGS 417
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_HUMLU (Maturase K OS=Humulus lupulus GN=matK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQ G + +N L   K+A  FLGYLS +R+N  +VRSQMLENSFL+DN+MKK+DT +PI  LIGSL K +FCN +G P+SKSTW+D SD  +IDRF RICRNL HYYSGS
Sbjct:  295 LMNKWKYYLVHLWQCHFYVWSQAGSIYINQL--SKHAFGFLGYLSSMRINLSVVRSQMLENSFLMDNAMKKIDTLIPISPLIGSLAKMKFCNVVGQPLSKSTWADLSDFDIIDRFARICRNLFHYYSGS 421
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_FAGHA (Maturase K OS=Fagus hayatae GN=matK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 87/129 (67.44%), Postives = 103/129 (79.84%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   S PGR+ +N L   K++++F GY S V+LN  +VRSQMLENSFLI+N+ KK+D  VPII LIGSL KARFCNALGHPISK T +D SD  +++RF+RICRNLSHYYSGS
Sbjct:  292 LMNKWKYYLVNLWQCHFYVWSHPGRIHINQL--SKHSLDFWGYFSSVQLNPSVVRSQMLENSFLINNAPKKLDIIVPIIPLIGSLAKARFCNALGHPISKLTRADLSDFEILNRFLRICRNLSHYYSGS 418
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_GLETR1.028e-4465.63Maturase K OS=Gleditsia triacanthos GN=matK PE=3 S... [more]
MATK_ACTCH1.028e-4467.44Maturase K OS=Actinidia chinensis GN=matK PE=3 SV=... [more]
MATK_ROSMU1.343e-4466.67Maturase K OS=Rosa multiflora GN=matK PE=3 SV=1[more]
MATK_ROSGI1.343e-4466.67Maturase K OS=Rosa gigantea GN=matK PE=3 SV=1[more]
MATK_ROSCN1.343e-4466.67Maturase K OS=Rosa canina GN=matK PE=3 SV=1[more]
MATK_ROSCL1.343e-4466.67Maturase K OS=Rosa californica GN=matK PE=3 SV=1[more]
MATK_ROSCA1.343e-4466.67Maturase K OS=Rosa carolina GN=matK PE=3 SV=1[more]
MATK_ROSAC1.343e-4466.67Maturase K OS=Rosa acicularis GN=matK PE=3 SV=1[more]
MATK_HUMLU1.343e-4465.89Maturase K OS=Humulus lupulus GN=matK PE=3 SV=1[more]
MATK_FAGHA1.343e-4467.44Maturase K OS=Fagus hayatae GN=matK PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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