CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1946 contig Csv1_Contig1946:641..1059. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PORAR (Maturase K OS=Portulacaria afra GN=matK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.754e-44
Identity = 83/129 (64.34%), Postives = 103/129 (79.84%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWKYYL+  WQ HF   SQP R+ +N L   K++++F+G+ S VRLNS +VRSQM+EN+FLIDN++KK DT + II L+GSL KA+FCN LGHPISKS W+D  DS +IDRF RICRNLSHYYSGS
Sbjct:  293 LMHKWKYYLIHFWQCHFSLWSQPRRIYINRL--SKHSLDFMGFFSSVRLNSSVVRSQMVENAFLIDNTIKKFDTIIRIIPLVGSLAKAKFCNVLGHPISKSVWADLLDSDIIDRFGRICRNLSHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_GORLA (Maturase K OS=Gordonia lasianthus GN=matK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.754e-44
Identity = 86/129 (66.67%), Postives = 103/129 (79.84%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ +F   SQPGR+  N L   K++++FLGYLS VRLN  +VRSQMLENSFLI N++KK DT VPII +IGSL+KA+FCN LGHPISK  W+D SDS ++D+F RI RNLSHY+SGS
Sbjct:  296 LMNKWKYYLVNFWQCYFYMWSQPGRIHTNQL--SKHSLDFLGYLSSVRLNPSMVRSQMLENSFLIGNTIKKFDTLVPIIPMIGSLSKAKFCNVLGHPISKPVWTDLSDSDILDQFGRIYRNLSHYHSGS 422          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ACTCU (Maturase K OS=Actinodium cunninghamii GN=matK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.754e-44
Identity = 88/128 (68.75%), Postives = 100/128 (78.12%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWKYYLV  WQ HF A  QPGR+ +N L   KY+++FLGY S  RLNS LVRSQMLEN FLI+N+M K +T VPII LIGSL KA FCN  GHPISK T +D SDS +IDRF+RICRNLSHY+SGS
Sbjct:  292 MNKWKYYLVNFWQYHFYAWFQPGRININQLV--KYSLDFLGYRSNARLNSSLVRSQMLENLFLINNAMNKFETIVPIISLIGSLYKANFCNTFGHPISKPTRTDSSDSDIIDRFLRICRNLSHYHSGS 417          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MANZA (Maturase K OS=Manilkara zapota GN=matK PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.291e-44
Identity = 87/129 (67.44%), Postives = 100/129 (77.52%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYY V  WQ +F   SQPGR+ +N L    ++ +FLGYLS VRL   +VRSQMLENSFLI N++KK DT VPII LIGSL+KA+FCN LGHPISK  W+D SDS +IDRF RI RNLSHYYSGS
Sbjct:  296 LMNKWKYYFVNFWQCYFYMWSQPGRIHINQL--SNHSFDFLGYLSSVRLTPSMVRSQMLENSFLIGNAIKKFDTLVPIIPLIGSLSKAKFCNVLGHPISKPVWADLSDSDIIDRFGRIYRNLSHYYSGS 422          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_GYMCH (Maturase K OS=Gymnocladus chinensis GN=matK PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.291e-44
Identity = 84/128 (65.62%), Postives = 100/128 (78.12%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWKYYL+ LWQ HF   SQPG++ +N L   +++  FLGY S VRLN  +VRSQMLENSF+I+N MKK+DT +PII LI SL KA FCN LGHPISK  W+D SD  +IDRF+RICRNLSHYY+GS
Sbjct:  293 MNKWKYYLIHLWQCHFYVWSQPGKIHINQL--SEHSFYFLGYFSNVRLNPSVVRSQMLENSFIIENVMKKLDTIIPIIPLIRSLAKANFCNVLGHPISKPVWADSSDFDIIDRFLRICRNLSHYYNGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_COFAR (Maturase K OS=Coffea arabica GN=matK PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.291e-44
Identity = 86/129 (66.67%), Postives = 99/129 (76.74%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK YLV  WQ HF     PGRV +N L    Y+ NF+GYLS VRLN  +VRSQMLEN+FLI+N++KK DT VP+I LIGSL KA+FCN LGHPISK  W+D +DS +IDRF  ICRNLSHYYSGS
Sbjct:  293 LMNKWKSYLVNFWQCHFGIWFHPGRVYINQL--PNYSFNFMGYLSSVRLNHSMVRSQMLENAFLINNAIKKFDTLVPLIPLIGSLAKAKFCNLLGHPISKPIWTDLADSDIIDRFWHICRNLSHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ACTDE (Maturase K OS=Actinidia deliciosa GN=matK PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.291e-44
Identity = 86/129 (66.67%), Postives = 102/129 (79.07%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ +F    QPGR+Q+N L    ++++FLGYLS VRLN  +VRSQMLENSFLI N++KK DT VPII LIGSL KA+FCN LGHP+SK  W+D SDS +IDRF RI RNLSHY++GS
Sbjct:  292 LMNKWKYYLVNFWQCYFYMWCQPGRIQINQL--SNHSLDFLGYLSSVRLNPSMVRSQMLENSFLIGNAIKKFDTIVPIIPLIGSLYKAKFCNVLGHPVSKPVWADLSDSDIIDRFGRIYRNLSHYHTGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MAIPO (Maturase K OS=Maihuenia poeppigii GN=matK PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.992e-44
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWKYYL+  WQ HF   SQP R+ +N L   K++++F+G+ S VRLNS +VRSQM+ENSFLIDN +KK DT V II L+GSL KA+FC  LGHPISKS W+D  DS +IDRF RICRNLSHYYSGS
Sbjct:  299 LMHKWKYYLINFWQCHFSLWSQPRRIYINRL--SKHSLDFMGFFSSVRLNSSVVRSQMVENSFLIDNPIKKFDTIVRIIPLVGSLAKAKFCTVLGHPISKSVWTDLLDSDIIDRFGRICRNLSHYYSGS 425          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ROSST (Maturase K OS=Rosa stellata GN=matK PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.907e-44
Identity = 86/129 (66.67%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+  N L   K++ +FLGYLS +R N  +VRSQ+LENSFL+DN+MKK+DT  PII +IGSL K +FCN  GHPISKS+W+D SDS +IDRFVRI  NLSHYYSGS
Sbjct:  293 LMNKWKYYLVHFWQCHFYVWSQPGRIHRNQL--SKHSFDFLGYLSSIRPNISVVRSQLLENSFLMDNAMKKLDTLFPIIPMIGSLAKVKFCNTSGHPISKSSWADSSDSDIIDRFVRIGGNLSHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_POROL (Maturase K OS=Portulaca oleracea GN=matK PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.907e-44
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWKYYL+  WQ  F   SQP R+ +N L   K++++F+G+ S VRLNS +VRSQM+ENSFLIDN +KK DT V II L+GSL KA+FCN LGHPISKS W+D  DS +IDRF RICRNLSHYYSGS
Sbjct:  297 LMHKWKYYLINFWQSRFSLWSQPRRIYINPL--SKHSLDFMGFFSSVRLNSSVVRSQMVENSFLIDNPIKKFDTIVRIIPLVGSLAKAKFCNVLGHPISKSVWTDLLDSDIIDRFGRICRNLSHYYSGS 423          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_PORAR1.754e-4464.34Maturase K OS=Portulacaria afra GN=matK PE=3 SV=1[more]
MATK_GORLA1.754e-4466.67Maturase K OS=Gordonia lasianthus GN=matK PE=3 SV=... [more]
MATK_ACTCU1.754e-4468.75Maturase K OS=Actinodium cunninghamii GN=matK PE=3... [more]
MATK_MANZA2.291e-4467.44Maturase K OS=Manilkara zapota GN=matK PE=3 SV=1[more]
MATK_GYMCH2.291e-4465.63Maturase K OS=Gymnocladus chinensis GN=matK PE=3 S... [more]
MATK_COFAR2.291e-4466.67Maturase K OS=Coffea arabica GN=matK PE=3 SV=1[more]
MATK_ACTDE2.291e-4466.67Maturase K OS=Actinidia deliciosa GN=matK PE=3 SV=... [more]
MATK_MAIPO2.992e-4465.12Maturase K OS=Maihuenia poeppigii GN=matK PE=3 SV=... [more]
MATK_ROSST3.907e-4466.67Maturase K OS=Rosa stellata GN=matK PE=3 SV=1[more]
MATK_POROL3.907e-4465.12Maturase K OS=Portulaca oleracea GN=matK PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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