CB305001

Overview
NameCB305001
Unique NameCB305001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_STRT1 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=tpiA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            I C GE+LE  E+G     V  Q  A    ++     + V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R++YGGSV   N  E  A PDVDG LVGGASL+PE
Sbjct:  125 IICCGESLETYEAGKAAEFVGAQVSAALAGLTPEQVASSVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVLYGGSVKPENVAEYMACPDVDGALVGGASLEPE 242          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_AGRT5 (Triosephosphate isomerase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=tpiA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = -3
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I C+GET ++R++G T+ ++  Q        +  +N V+AYEPVWAIGTG   T    +E HA +R  L      +   + RI+YGGSV  AN  EL    +VDG L+GGASLK
Sbjct:  128 IVCIGETADERKAGQTLDILKRQLAGSLPDEATAENTVIAYEPVWAIGTGLTPTTQDVREAHAFMRDELVKRF-GDAGKTMRILYGGSVKPANALELMGVENVDGALIGGASLK 240          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_STRP8 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M18 GN=tpiA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.394e-19
Identity = 54/118 (45.76%), Postives = 68/118 (57.63%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            I C GE+LE  E+G     V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:  125 IICCGESLETYEAGKAAEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_ONYPE (Triosephosphate isomerase OS=Onion yellows phytoplasma GN=tpiA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.394e-19
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = -3
Query:  296 CVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 637
            CVGE+L  +E+  T   + +Q   I   +      N+++AYEPVWAIGTGK ATP  A +V  ++R  +    S++ + + RIIYGGSV+ AN K +  QP +DG L G ASL+ E
Sbjct:  129 CVGESLLTKENNQTQVFLDQQLTNIFAGVPEEALQNIIIAYEPVWAIGTGKSATPQDANKVIEQIRDKVTALYSSQASCAMRIIYGGSVSVANIKTILEQPAIDGILAGKASLQTE 244          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_SYNS9 (Triosephosphate isomerase OS=Synechococcus sp. (strain CC9902) GN=tpiA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 52/116 (44.83%), Postives = 66/116 (56.90%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            I CVGET EQRE G    V+  Q +   E +   D +V+AYEP+WAIGTGK    A+A  +   +R W+        +    I YGGSV G N  EL    D+DG LVGGASL+P+
Sbjct:  125 IVCVGETDEQRERGEAERVIRRQIEQGLEGLDA-DLLVVAYEPIWAIGTGKTCEAAEANRICGLIRSWVG-------SPDLVIQYGGSVKGGNIDELMGMSDIDGVLVGGASLQPD 232          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_PHYAS (Triosephosphate isomerase OS=Phytoplasma australiense GN=tpiA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 46/116 (39.66%), Postives = 74/116 (63.79%), Query Frame = -3
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            + C+GETLE +E+  T   + +Q     + +   D   +++AYEPVWAIGTGK A+P +A +   ++R+ + +  SA+V  S +I+YGGSV+  N + +  Q ++DG LVG ASL+
Sbjct:  127 VLCLGETLETKENNKTKEFLEKQLTQALKDVPQEDLEKILIAYEPVWAIGTGKTASPQEANQTIKQIREKVTNLYSAQVVQSLKILYGGSVSSNNVEAILEQNEIDGVLVGKASLE 242          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_OLICO (Triosephosphate isomerase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=tpiA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 50/114 (43.86%), Postives = 67/114 (58.77%), Query Frame = -3
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I CVGET  +R++G    VV  Q        +   N+V+AYEPVWAIGTG   T    +E+HA +R+ L     AE     R++YGGS+  AN  E+ A  +V+G L+GGASLK
Sbjct:  127 IVCVGETRAERDAGRAAEVVGRQLDGSVPDGARAANLVVAYEPVWAIGTGLTPTSQDIEEIHAVIRQNLTGRFKAE-GEGVRLLYGGSLKPANAAEILALANVNGGLIGGASLK 239          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPU (Triosephosphate isomerase OS=Mycoplasma pulmonis GN=tpiA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 53/114 (46.49%), Postives = 75/114 (65.79%), Query Frame = -3
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I CVGE+LE+ E+G T AV+ +Q K   E + +   +V+AYEP+WAIGTGKVAT   AQ++     K+++   S ++     I YGGSV+ +N + L  Q D+DG LVGGASL+
Sbjct:  130 IICVGESLEEYEAGKTKAVIKKQIKQSLEAL-DLSKIVVAYEPIWAIGTGKVATAEVAQQI----CKFIRSITSKDLI----IQYGGSVSPSNIENLMKQEDIDGALVGGASLE 234          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPE (Triosephosphate isomerase OS=Mycoplasma penetrans GN=tpiA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = -3
Query:  296 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 643
            + CVGETLE+ E+  +  VV  QTK     +S     NVV+AYEPVWAIGTGKV T  +  ++  ++R  L    S +   S  ++YGGSVN  N +E   Q +++G LVG   LK E
Sbjct:  122 VVCVGETLEEYEANKSFDVVWNQTKKALANVSEAQLKNVVIAYEPVWAIGTGKVPTGKEVDDLIQKVRDELSKLYSKQAVESLVVLYGGSVNDKNAEEFFKQKNINGALVGSFCLKAE 239          
BLAST of CB305001 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIEC (Triosephosphate isomerase 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = -3
Query:  302 IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 643
            I C+GET ++R +G  + V+  Q  A     +  +N V+AYEP+WAIGTG   T    ++ HA +R  L      E     R++YGGSV  AN  EL    +VDG L+GGASLK
Sbjct:  128 IICIGETADERRAGQELDVIKRQLSASVPDAATAENTVIAYEPIWAIGTGVTPTSGDVEKAHAFMRAELVSRFGDE-GRKMRLLYGGSVKPANAGELLGIANVDGALIGGASLK 240          
The following BLAST results are available for this feature:
BLAST of CB305001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRT17.193e-1944.92Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_AGRT57.193e-1942.98Triosephosphate isomerase OS=Agrobacterium tumefac... [more]
TPIS_STRP89.394e-1945.76Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_ONYPE9.394e-1943.10Triosephosphate isomerase OS=Onion yellows phytopl... [more]
TPIS_SYNS91.227e-1844.83Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_PHYAS1.227e-1839.66Triosephosphate isomerase OS=Phytoplasma australie... [more]
TPIS_OLICO1.227e-1843.86Triosephosphate isomerase OS=Oligotropha carboxido... [more]
TPIS_MYCPU1.227e-1846.49Triosephosphate isomerase OS=Mycoplasma pulmonis G... [more]
TPIS_MYCPE1.227e-1843.22Triosephosphate isomerase OS=Mycoplasma penetrans ... [more]
TPIS1_RHIEC1.227e-1842.11Triosephosphate isomerase 1 OS=Rhizobium etli (str... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305001 ID=CB305001; Name=CB305001; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAGGGAAAAGC
AACCATTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGAAACTCCG
GCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTGCT
GCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATTCT
AGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCTCA
GTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTA
CCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTGGA
TATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCCACAACAGCCACTGTAG
ATCCTGATTCTCGCTGTTCCAGAGTCTCTCCAACACAAGCAATGA
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