CB305019

Overview
NameCB305019
Unique NameCB305019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305019_ssr187 microsatellite CB305019_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:230..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305019 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.493e-25
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = -2
Query:  254 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 529
            AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ ACNCLK A R I G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB305019 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.493e-25
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = -2
Query:  254 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 529
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   26 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CB305019 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.493e-25
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = -2
Query:  254 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 529
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB305019 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 5.554e-25
Identity = 52/97 (53.61%), Postives = 66/97 (68.04%), Query Frame = -2
Query:  254 APVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 544
            AP  +A+TCGQV   LAPCI +       P   CC+GVR+LN AA TT DRQ  C CLKQ   ++ G+  ++ AG+P +CGV+IPY ISP+TDCSRV
Sbjct:   22 APAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB305019 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.554e-25
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  251 APVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 544
            AP   +++CG+VT  LAPC+ +L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  SI GI+   AAGLP  CGV+IPYKISP+TDCS V+
Sbjct:   19 APHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CB305019 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.474e-25
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  251 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 532
            +AITCGQV   L  C+ + R GG  PP  CC GVR+LN  A+TTPDRQ ACNCLK       G+NA + AG+P +CGV+IPY I   TDC++VR
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB305019 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.474e-25
Identity = 54/98 (55.10%), Postives = 69/98 (70.41%), Query Frame = -2
Query:  251 APVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 544
            AP   A++CGQV   LAPC+ +L+  GR P   CC GV+ L GAA++  DR+ AC CLK A  +I GI+   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   19 APHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB305019 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.111e-24
Identity = 53/100 (53.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:  251 PVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 541
            P+T+  A++CG V  +LA CI ++  GG  PP  CC+GV++LN  A+TTPDRQ ACNC++ A R++  G+NA  AAG+P+ CGV+IPYKIS +T+C  VR
Sbjct:   20 PITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CB305019 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.111e-24
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = -2
Query:  251 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 529
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB305019 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = -2
Query:  251 PVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 541
            P+T+  A++CG V+G +APCI +L       P  CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
The following BLAST results are available for this feature:
BLAST of CB305019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP1_ORYSI2.493e-2558.70Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLT2B_ORYSJ2.493e-2558.70Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ2.493e-2558.70Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP4_ORYSJ5.554e-2553.61Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP2_SOLLC5.554e-2556.12Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
SCA_LILLO9.474e-2555.32Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP2_TOBAC9.474e-2555.10Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_ARATH2.111e-2453.00Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLT41_HORVU2.111e-2453.76Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTPD_BRAOT2.757e-2453.54Non-specific lipid-transfer protein D OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_G12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305019 ID=CB305019; Name=CB305019; organism=Citrus sinensis; type=EST; length=587bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGATAATACCACAAAATAAC
TAGAATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGATA
TTAAAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTGG
AGACTCGTTCGGACAAAGAAATTAACATATATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGA
CTCCACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGG
ATTGATCGGTAAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGG
GTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAG
GAGCCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCAC
CAGAATGCACAAAAGCAAAGCACAAACAAGCTTAAGA
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