CB305027

Overview
NameCB305027
Unique NameCB305027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26
Identity = 59/118 (50.00%), Postives = 83/118 (70.34%), Query Frame = -2
Query:  248 MAALKLVC--ALRLCILVTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 592
            MA+L++ C  AL   ++++AP+  A I+CG V+G+L PC+ +L+ GG  P P CC GV+ LNGAARTT DR+AACNCLK +  SI G+     A LP +CGV +PY IS +T+C+ +R
Sbjct:    1 MASLRVSCLVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 58/114 (50.88%), Postives = 76/114 (66.67%), Query Frame = -2
Query:  248 LKLVCALRLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 583
            +KL C +  C++V  P+    A++CG V+G+LA CI +L   G  P   CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:    5 VKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = -2
Query:  251 AALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 589
            A L LV  +   +L       AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ ACNCLK A R I G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:    4 AQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = -2
Query:  251 AALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 589
            A L LV  +   +L       AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ ACNCLK A R I G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:    4 AQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  251 MAALKLVC-ALRLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 592
            MA  +LV  AL   +L+  P T   AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G+NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:    1 MARAQLVLVALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.647e-26
Identity = 58/114 (50.88%), Postives = 76/114 (66.67%), Query Frame = -2
Query:  248 LKLVCALRLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 583
            +KL C +  C++V  P+    A++CG V+G+LA CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  + P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:    5 VKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.515e-26
Identity = 61/115 (53.04%), Postives = 73/115 (63.48%), Query Frame = -2
Query:  248 ALKLVCALRLCILVTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 586
            +LKL C + LC+LV AP+   AI+  QV  SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  IN  VAAGLP QC V IPYKISP+ DC RV+
Sbjct:    6 SLKLACVVVLCLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 7.701e-26
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = -2
Query:  251 LCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 559
            + +L+ AP  +A+TCGQV   LAPCI +       P   CC+GVR+LN AA TT DRQ  C CLKQ   ++ G+  ++ AG+P +CGV+IPY ISP+TDCSRV
Sbjct:   16 VALLLAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 58/115 (50.43%), Postives = 71/115 (61.74%), Query Frame = -2
Query:  248 MAALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 592
            MA    VC L L   +     +AITCGQV   L  C+ + R GG  PP  CC GVR+LN  A+TTPDRQ ACNCLK       G+NA + AG+P +CGV+IPY I   TDC++VR
Sbjct:    1 MARSSAVCFLLLLAFLIG-TASAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = -2
Query:  248 ALKLVC-ALRLCILVTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 586
            ++ L C AL +C++V AP+  A ++CG VTG LAPCI +L TGG  P   CC GV+ L  AA TT DRQAACNCLK A  +I  +N   AA LP +C V+IPYKIS  T+C+ ++
Sbjct:    4 SMNLACVALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
The following BLAST results are available for this feature:
BLAST of CB305027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP1_LENCU1.188e-2650.00Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP3_BRANA2.027e-2650.88Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_ORYSJ2.027e-2652.21Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI2.027e-2652.21Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLT2B_ORYSJ2.027e-2653.85Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP1_BRANA2.647e-2650.88Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP6_GOSHI4.515e-2653.04Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP4_ORYSJ7.701e-2651.46Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
SCA_LILLO1.314e-2550.43Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP3_LENCU1.314e-2552.17Non-specific lipid-transfer protein 3 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_A08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_A08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305027 ID=CB305027; Name=CB305027; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATACCACAAAATAACTAG
AATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGATATTA
AAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGA
CTCGTTCGGACAAAGAATTTAACATATATATTCTTTATTTATTTATTCTT
CTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCT
GACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTC
CACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGATT
GATCGGTAAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGT
GGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTG
GAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAG
CCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCACCAG
AATGCACAAACGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGAATTT
TTCAGGGAGGCTTTTGCTTGGTTATAGCTAGTTAT
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