CB305027

Overview
NameCB305027
Unique NameCB305027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305027_ssr184 microsatellite CB305027_ssr184:184..195. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:179..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = -2
Query:  251 AALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLPRQCGVSIPYKISPNTDCSRV 589
            AA KL     +  ++      AITCGQV+ +L PC A+ +  G  P   CC+GV+ L G AR+T D+QA C CLK    S+ G  NA  AAG+P +CGVS+PY IS + DCS++
Sbjct:    5 AATKLALVALVAAMLLVAADAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLK----SVAGAYNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.746e-22
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  251 AALKLVCALRLCILVTAP-VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 589
            A + L+ A  + +L  AP    A+ CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I  +N N AA +P +C V++PY ISP+ DCSR+
Sbjct:    4 AQVLLMAAALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.811e-22
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = -2
Query:  251 LVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 577
            + C + L I + +P  + I CG VT +LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A + I G+N ++ A LP  CGVSIPY IS +T+C  +
Sbjct:    8 ITCLIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21
Identity = 58/115 (50.43%), Postives = 74/115 (64.35%), Query Frame = -2
Query:  248 LKLVCALRLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLPRQCGVSIPYKISPNTDCSRVR 583
            LKL   + +C+LVTAP+ +  AI+CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R++   +NA  AA LP  C V I Y IS  T+C+ VR
Sbjct:    5 LKLSTLVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = -2
Query:  248 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 526
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A +    +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = -2
Query:  248 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 526
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A +    +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.314e-20
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = -2
Query:  251 ALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 586
            AL  + A+    +V    + A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:    9 ALVALVAVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.314e-20
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = -2
Query:  251 ALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 586
            AL  + A+    +V    + A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:    9 ALVALVAVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = -2
Query:  251 LVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 577
            +  AL L +        AI CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I  +N + A  +P +CGV++PY IS N DCSRV
Sbjct:    6 MAVALVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 45/92 (48.91%), Postives = 55/92 (59.78%), Query Frame = -2
Query:  251 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 526
            AI C QV   LA C+ +L+ GG  P P CCNG+ SL  AA    DRQ ACNCLK    +IPGIN + A  LP +CGV+I    S   DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
The following BLAST results are available for this feature:
BLAST of CB305027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP8_HORVU3.955e-2245.61Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP1_HORVU6.746e-2243.86Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTPC_ARATH8.811e-2244.95Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP5_ARATH1.503e-2150.43Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP_AMACA2.834e-2048.94Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP2.834e-2048.94Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP3_ORYSJ6.314e-2039.29Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI6.314e-2039.29Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT1.407e-1943.12Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTPB_ARATH2.031e-1848.91Non-specific lipid-transfer protein 11 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_A08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_A08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305027 ID=CB305027; Name=CB305027; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATACCACAAAATAACTAG
AATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGATATTA
AAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGA
CTCGTTCGGACAAAGAATTTAACATATATATTCTTTATTTATTTATTCTT
CTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCT
GACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTC
CACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGATT
GATCGGTAAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGT
GGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTG
GAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAG
CCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCACCAG
AATGCACAAACGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGAATTT
TTCAGGGAGGCTTTTGCTTGGTTATAGCTAGTTAT
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