CB305036

Overview
NameCB305036
Unique NameCB305036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305036_ssr241 microsatellite CB305036_ssr241:241..252. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6235 contig Csv1_Contig6235:26..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.364e-35
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = -3
Query:  302 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKK 631
            A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +AVSVF FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GLA KVEK+ +Q +++KK
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKK 112          
BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.364e-35
Identity = 73/115 (63.48%), Postives = 91/115 (79.13%), Query Frame = -3
Query:  290 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKKQAKE 631
            A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D+  V  F  RTHFGGG+STGF LIYDS ES KKFEP YRL+R G A  ++K +R+Q K+RK + K+
Sbjct:    4 AVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKK 117          
BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.712e-35
Identity = 73/113 (64.60%), Postives = 90/113 (79.65%), Query Frame = -3
Query:  290 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 628
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + + VF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL ++GL  K + SRKQ KERK + K+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKK 116          

HSP 2 Score: 21.1718 bits (43), Expect = 3.712e-35
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -1
Query:  280 KRGKNRQKKIRG 315
            K  KNR KK+RG
Sbjct:  108 KERKNRMKKVRG 119          
BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 8.984e-35
Identity = 71/115 (61.74%), Postives = 92/115 (80.00%), Query Frame = -3
Query:  290 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKKQAKE 631
            A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY   DA+AV  F  RTH+GGG++TGF LIYD VE+ KKFEP YRL+R G A  ++K +R+Q K+RK + K+
Sbjct:    4 AVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKK 117          
BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.069e-34
Identity = 73/113 (64.60%), Postives = 89/113 (78.76%), Query Frame = -3
Query:  290 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 628
            +TIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY     + + VF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERK + K+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116          

HSP 2 Score: 21.1718 bits (43), Expect = 1.069e-34
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -1
Query:  280 KRGKNRQKKIRG 315
            K  KNR KK+RG
Sbjct:  108 KERKNRMKKVRG 119          
BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.459e-34
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = -3
Query:  290 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 625
            TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V   + V VF F+T+FGGGKSTGF LIYD+++ AKKFEPK+RL R+GL  K   +RKQ KERK + K+
Sbjct:    7 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 117          
BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.857e-34
Identity = 70/114 (61.40%), Postives = 89/114 (78.07%), Query Frame = -3
Query:  290 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 631
            ++T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY     + V VF F+T FGGGK+TGF ++YDS++ AKK EPKYRL R+GL  K + SRKQ KERK + K+
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTTP-DVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKK 116          

HSP 2 Score: 21.1718 bits (43), Expect = 8.857e-34
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -1
Query:  280 KRGKNRQKKIRG 315
            K  KNR KK+RG
Sbjct:  108 KERKNRMKKVRG 119          
BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.154e-33
Identity = 70/113 (61.95%), Postives = 88/113 (77.88%), Query Frame = -3
Query:  290 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 628
            +T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY     + V VF FRT FGGGK+TGF ++YDS++ AKK EPK+RL R+GL  K + SRKQ KERK + K+
Sbjct:    5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTP-DVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKK 116          

HSP 2 Score: 21.1718 bits (43), Expect = 1.154e-33
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -1
Query:  280 KRGKNRQKKIRG 315
            K  KNR KK+RG
Sbjct:  108 KERKNRMKKVRG 119          
BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.297e-32
Identity = 68/113 (60.18%), Postives = 86/113 (76.11%), Query Frame = -3
Query:  290 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 628
            +TIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY     + V VF FRT FGGGK+TGF ++YDS++ AKK EPK+RL  +GL  K + SRKQ  ER+ + K+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKK 116          
The following BLAST results are available for this feature:
BLAST of CB305036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS24_YEAST2.364e-3567.2740S ribosomal protein S24 OS=Saccharomyces cerevis... [more]
RS24B_SCHPO2.364e-3563.4840S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24_XENLA3.712e-3564.6040S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24A_SCHPO8.984e-3561.7440S ribosomal protein S24-A OS=Schizosaccharomyces... [more]
RS24_MACFA1.069e-3464.6040S ribosomal protein S24 OS=Macaca fascicularis G... [more]
RS24_SPOFR4.459e-3465.1840S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_ICTPU8.857e-3461.4040S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24_TAKRU1.154e-3361.9540S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24_ORYLA9.297e-3260.1840S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305036 ID=CB305036; Name=CB305036; organism=Citrus sinensis; type=EST; length=633bp
TTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTATTCAGAGAAAGTACCTCT
TTATTTCACTAAGAAACATTTTTCCCTCCAGGTACTAATATTATAGCAAA
CATCAAATGTAATAATGTCTCATAAAAATACAAAAGAGCTAAGCCACTCG
CTAGTTATTTTAATAACTAAAAGAAAGAGCGAAGGAACTATTCGTGCTGT
TGGAAGAAGCCAAGCCAAGTTTAAACGCCCTAAGGCCTCACTTCTTCTTC
TTGCCAGCTTCAGCCTTGGCCTTCTTGACACCTCTGATCTTCTTTTGCCT
GTTTTTTCCTCTCTTTCATCTGCTTCCTTGACTTCTCAACCTTGGTAGCC
AGTCCATTCCTGATTAGCCTGTACTTGGGCTCAAACTTCTTTGCACTCTC
AACAGAGTCATAGATGAGGCCAAACCCAGTTGATTTCCCACCTCCAAAAT
GTGTACGAAATTTGAACACAGATACAGCATTCGCATCCCTCACATCATAC
ATCCTCGCCAATTTCTCCTTCAACTCGGCCTTTGAAACGTTGGCTCGACC
TGGATGCAGAACATCGATAACAAATTGTTTCCTCGACAGAAGCCTGTTGG
TCATGAACTTTCTGGTTCGGATGGTGATCGCCT
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