CB305039

Overview
NameCB305039
Unique NameCB305039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2U1_MOUSE (Cytochrome P450 2U1 OS=Mus musculus GN=Cyp2u1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = -3
Query:  261 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTV 563
            + GFT+PKG  V +N+W++ RD + W+ P  F P RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ +F + L   +    M  +FGLT+
Sbjct:  417 LQGFTIPKGTVVLINLWSVHRDPAIWEKPDDFCPHRFLDDQGQLLKRETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQTFTFALPEGSEKPVMTGRFGLTL 518          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  315 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNA--DFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 572
            D ++ GF +P  +++ VN W +  +   W  P  F PERFL   A  +  G +F  +PFG GRR CPG+ LA+ +L + +G L+ +F+
Sbjct:  382 DAKLGGFDIPAESKILVNAWWLANNPDQWKKPEEFRPERFLEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFE 469          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  315 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 572
            D ++AG+ +P  +++ VN W +  + ++W  P  F PERF    S+ +  G +F  +PFG GRR CPG+ LA+ +L + +G ++ +F+
Sbjct:  382 DAKLAGYDIPAESKILVNAWWLANNPNSWKKPEEFRPERFFEEESHVEANGNDFRYVPFGVGRRSCPGIILALPILGITIGRMVQNFE 469          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2U1_BOVIN (Cytochrome P450 2U1 OS=Bos taurus GN=CYP2U1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  261 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMD-MEDKFGLTV 563
            + GFT+PKG  +  N+W++ RD + W+ P+ F P+RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ SF + L   +   +  K+GLT+
Sbjct:  431 LQGFTIPKGTIILPNLWSVHRDPAIWEKPNDFYPDRFLDDQGQLIKKETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQSFTFVLPKDSKPILTGKYGLTL 531          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2U1_HUMAN (Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.095e-13
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  261 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTV 578
            +++  + G+T+PKG  +  N+W++ RD + W+ P  F P RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ SF + L  D+    +  +FGLT+
Sbjct:  426 SENTVLQGYTIPKGTLILPNLWSVHRDPAIWEKPEDFYPNRFLDDQGQLIKKETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQSFAFALPEDSKKPLLTGRFGLTL 532          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C77A2_SOLME (Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.095e-13
Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = -3
Query:  237 RLHXXXXXXXPRKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERF-LGS-NADFKG-QNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW-KLDNHNMDMEDKFGLTVQKAQPLHA 620
            R H           T+  ++ G+ +P G  V + +  I  D + W  P  F P+RF LG  +AD  G    ++IPFG GRRICPGL +A   + LML  L+  F+W   +N  +D  +K   TV     L A
Sbjct:  374 RKHPPTYMSLTHAVTEPAKLGGYDIPTGVNVEIFLPGISDDPNLWSEPEKFDPDRFYLGKEDADITGVSGVKMIPFGMGRRICPGLNMATVHVSLMLARLVQEFEWADPENTRVDFTEKLEFTVVMKNTLRA 505          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.430e-13
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  315 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 572
            D ++ G+ +P  +++ VN W +  +   W  P  F PERFL   S  +  G +F  +PFG GRR CPG+ LA+ +L + +G L+ +F+
Sbjct:  382 DAKLGGYDIPAESKILVNAWWLANNPDQWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFE 469          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.430e-13
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  315 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 572
            D ++ G+ +P  +++ VN W +  +   W  P  F PERFL   S  +  G +F  +PFG GRR CPG+ LA+ +L + +G L+ +F+
Sbjct:  382 DAKLGGYDIPAESKILVNAWFLANNPEHWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFE 469          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C71AR_ARATH (Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=CYP71A27 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.430e-13
Identity = 37/125 (29.60%), Postives = 68/125 (54.40%), Query Frame = -3
Query:  231 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWD-NPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-----DNHNMDMEDKFGLTVQKAQPLHAVP 587
            R  ++DV++ G+ +  G  V +N WA+ R+ + W  + + + PER       F+  + + +PFGAGRR+CPG+  ++ +  L L +L+  F+W+L      +   D+ +  G+ V +  PL   P
Sbjct:  369 RLPSEDVQLKGYDISAGTHVIINAWALQRNPAIWGLDANEYRPERHFWYEFGFQRTDSKFVPFGAGRRLCPGIGFSLVLSKLALANLVKRFNWRLKVGPVGDDKPDLAEASGIDVCRKFPLIVFP 493          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  315 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 572
            D ++ G+ +P  +++ VN W +  + + W  P  F PERF    S+ +  G +F  +PFG GRR CPG+ LA+ +L + LG L+ +F+
Sbjct:  382 DAKLGGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFFEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFE 469          
The following BLAST results are available for this feature:
BLAST of CB305039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CP2U1_MOUSE4.916e-1440.38Cytochrome P450 2U1 OS=Mus musculus GN=Cyp2u1 PE=2... [more]
TCMO_HELTU6.420e-1437.50Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
TCMO_ARATH6.420e-1435.23Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
CP2U1_BOVIN6.420e-1439.81Cytochrome P450 2U1 OS=Bos taurus GN=CYP2U1 PE=2 S... [more]
CP2U1_HUMAN1.095e-1337.61Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1... [more]
C77A2_SOLME1.095e-1334.85Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77... [more]
TCMO_ZINEL1.430e-1336.36Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_CATRO1.430e-1336.36Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
C71AR_ARATH1.430e-1329.60Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=C... [more]
TCMO_PHAAU1.868e-1336.36Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305039 ID=CB305039; Name=CB305039; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTATTAAATNNNATGACT
TTATAGTTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAA
AAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAAC
CACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCT
ACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTT
GAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGG
TTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATG
TAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTC
CGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCT
AAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATC
TCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTG
TGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAG
GGAGCTGCAGGGTGCAATCTCA
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