CB305039

Overview
NameCB305039
Unique NameCB305039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_CANFA (Cytochrome P450 1A1 OS=Canis familiaris GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = -3
Query:  240 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQPLH 578
            T+D  ++GF +PKG  VFVN W I  D+  W NP  F PERFL  +    K  + ++I FG G+R C G  +A   + L L  L+   ++ + +   +DM   +GLT++ A+  H
Sbjct:  395 TRDTSLSGFYIPKGRCVFVNQWQINHDQKLWGNPSEFQPERFLTLDGTINKALSEKVILFGLGKRKCIGETIARLEVFLFLAILLQQVEFSVPEGTKVDMTPIYGLTMKHARCEH 509          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_BALAC (Cytochrome P450 1A1 OS=Balaenoptera acutorostrata GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = -3
Query:  240 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQPLH 578
            T+D  + GF +PKG  VFVN W I  D+  WD+P  F PERFL ++    K  + ++I FG G+R C G  +A   + L L  L+   ++++     +DM   +GLT++ A   H
Sbjct:  395 TRDTSLNGFYIPKGRCVFVNQWQINHDQKLWDDPSAFWPERFLTADGTINKALSEKVILFGLGKRKCIGETIARWEVFLFLAILLQQVEFRVTPGVKVDMTPVYGLTMKHAHCEH 509          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C513F_DICDI (Probable cytochrome P450 513F1 OS=Dictyostelium discoideum GN=cyp513f1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = -3
Query:  252 RLHXXXXXXXPRKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMED--KFGLTVQKA 620
            RL+       P   + DVEI GF + KG Q+  N+++  R E  WD P +FIPERF+  NA+ K +N  ++ FG G R C G   A  M+ L +  LI ++ +   + N  +++  ++GL +  A
Sbjct:  371 RLYSIAPLSEPHYCSNDVEIKGFKIAKGTQIIQNIYSSSRSEQYWDKPLSFIPERFI-DNANIKEKNKNIVSFGLGLRGCIGKSFAEYMIFLTVVRLIKNYKFSNPSPNQPLKEIGEYGLVMNCA 494          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C75AK_ARATH (Cytochrome P450 705A20 OS=Arabidopsis thaliana GN=CYP705A20 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.186e-13
Identity = 38/118 (32.20%), Postives = 63/118 (53.39%), Query Frame = -3
Query:  234 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMEDKFGLTVQKAQPLHAV 587
            R   +  E+ GF + +   + VN +A+ RD +TW++P  F PERFL    + +    + I FG+GRR CPG  LA   +   +G+++  FD  +    + M++  GL +  A PL  +
Sbjct:  378 RTFQRSCEMKGFYIAEKTTLVVNAYAVMRDPTTWEDPDEFKPERFLRQEEERRA--LKHIAFGSGRRGCPGSNLATIFIGTAIGTMVQCFDLSIKGDKVKMDEVGGLNLTMAHPLECI 493          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C71AS_ARATH (Putative cytochrome P450 71A28 OS=Arabidopsis thaliana GN=CYP71A28 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.186e-13
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = -3
Query:  231 VFVNVWAIGRDESTWDNPHT--FIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMED---KFGLTVQKAQPLHAVP 530
            VF+N WAI RD   W  P+   F PER L    +F+GQ+F  IPFG+GRR+CP +  A  ++ + L + +  F+W+++   +  +D   + G+ V    PL A P
Sbjct:  378 VFINAWAIHRDTEKW-GPYAEEFKPERHLDLPLNFQGQDFNFIPFGSGRRLCPDIDFATMLIEVGLANFVYRFNWRVETRPLGDDDGLKQTGMEVCHKFPLIAFP 481          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_SQUAC (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalus acanthias GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 42/111 (37.84%), Postives = 58/111 (52.25%), Query Frame = -3
Query:  258 ATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFE-LIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTVQ 581
            A  D  I  +T+PKG +V +N+WAI  DE  W NP  F P RFL  +  +   + E  +PFGAG R+C G  LA   L L    ++  F  ++       D E KFG+ +Q
Sbjct:  378 ALADSSIGDYTIPKGTRVIINLWAIHHDEKEWKNPDAFDPGRFLDEDGKYVCSSSESYLPFGAGTRVCLGEMLARMELFLFTSWILQRFTVQVPPGYPPPDKEGKFGIVLQ 488          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  315 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNA--DFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 572
            D ++ G+ +P  +++ VN W +  + + W  P  F PERF    +  +  G +F  +PFG GRR CPG+ LA+ +L + LG L+ +F+
Sbjct:  383 DAKLGGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFFEEESLVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFE 470          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2D6_PANPA (Cytochrome P450 2D6 OS=Pan paniscus GN=CYP2D6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  306 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 578
            ++D+E+ GF +PKG  +F N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L   SL+  F + +
Sbjct:  379 SRDIEVQGFRIPKGTTLFTNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSV 468          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_RAT (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rattus norvegicus GN=Cyp17a1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13
Identity = 42/93 (45.16%), Postives = 53/93 (56.99%), Query Frame = -3
Query:  315 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL---GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 584
            KA  D  I  FTVPK   V VN+WA+  DE+ WD P  F+PERFL   GS+     Q++  +PFGAG R C G  LA + L +    L+  FD
Sbjct:  373 KANVDSSIGEFTVPKDTHVVVNLWALHHDENEWDQPDQFMPERFLDPTGSHLITPTQSY--LPFGAGPRSCIGEALARQELFVFTALLLQRFD 463          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C516B_DICDI (Probable cytochrome P450 516B1 OS=Dictyostelium discoideum GN=cyp516b1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = -3
Query:  312 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFK------------GQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW 587
            R A++D+++ G+T+PKG QV ++V+ +  DE  W +PH F PER+L SN   +             Q+   IPFG G R+C G+ +A   L+     +  +F W
Sbjct:  358 RIASEDIKVGGYTIPKGTQVMMSVYGMASDERYWKDPHIFNPERWLSSNHSTENGGGGGGVVGNSSQSEVFIPFGVGPRMCVGMGVAKDELYYCASQMFMNFKW 461          
The following BLAST results are available for this feature:
BLAST of CB305039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CP1A1_CANFA1.868e-1336.52Cytochrome P450 1A1 OS=Canis familiaris GN=CYP1A1 ... [more]
CP1A1_BALAC1.868e-1336.52Cytochrome P450 1A1 OS=Balaenoptera acutorostrata ... [more]
C513F_DICDI1.868e-1334.40Probable cytochrome P450 513F1 OS=Dictyostelium di... [more]
C75AK_ARATH3.186e-1332.20Cytochrome P450 705A20 OS=Arabidopsis thaliana GN=... [more]
C71AS_ARATH3.186e-1337.14Putative cytochrome P450 71A28 OS=Arabidopsis thal... [more]
CP17A_SQUAC4.162e-1337.84Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalu... [more]
TCMO_SOYBN5.435e-1335.23Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
CP2D6_PANPA5.435e-1340.22Cytochrome P450 2D6 OS=Pan paniscus GN=CYP2D6 PE=3... [more]
CP17A_RAT5.435e-1345.16Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rattus... [more]
C516B_DICDI7.099e-1334.62Probable cytochrome P450 516B1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305039 ID=CB305039; Name=CB305039; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTATTAAATNNNATGACT
TTATAGTTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAA
AAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAAC
CACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCT
ACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTT
GAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGG
TTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATG
TAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTC
CGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCT
AAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATC
TCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTG
TGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAG
GGAGCTGCAGGGTGCAATCTCA
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