CB305039

Overview
NameCB305039
Unique NameCB305039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2U1_RAT (Cytochrome P450 2U1 OS=Rattus norvegicus GN=Cyp2u1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.271e-13
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = -3
Query:  261 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTV 563
            + G+++PKG  V  N+W+I RD   W+ P  F P RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ SF + L   +    M  +FGLT+
Sbjct:  417 LQGYSIPKGTVVLPNLWSIHRDPVIWEKPDDFCPHRFLDDQGQLLKRETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQSFTFALPEGSEKPIMTGRFGLTL 518          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DE_BOVIN (Cytochrome P450 2D14 OS=Bos taurus GN=CYP2D14 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.271e-13
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = -3
Query:  306 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 578
            ++D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +   F  Q    IPF AGRR C G PLA   L L   SL+  F + +
Sbjct:  382 SRDIEVQGFHIPKGTTLITNLSSVLKDETVWEKPFRFHPEHFLDAQGRFVKQE-AFIPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSV 471          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_PERLE (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Peromyscus leucopus GN=Cyp17a1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.271e-13
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  315 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 584
            KA  D  I  FT+PK   V +N+WA+  +E  WD P  F+PERFL  + +     +   +PFGAG R C G  LA ++L L +  L+  FD
Sbjct:  372 KANIDSSIGEFTIPKDTHVVINLWALHHNEKEWDQPDRFMPERFLDATGSHLITPSLSYLPFGAGPRACIGEVLARQVLFLYVACLLQRFD 462          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C5131_DICDI (Probable cytochrome P450 513A1 OS=Dictyostelium discoideum GN=cyp513a1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.271e-13
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = -3
Query:  264 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMED--KFGLT 578
            ++DVE+ G+ +  G Q+  N+WA  R+E  +  P +FIPERF+      +  N  LI FG G R C G  LA   +  ML SLIN +++   N +  + +  KFG+T
Sbjct:  392 SEDVELNGYKICAGTQIIQNIWATHRNEKQFSEPDSFIPERFISQQ---QSANSNLIHFGCGVRDCIGKSLADSEIFTMLASLINRYEFTNPNPSTPLNEIGKFGIT 495          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_CHICK (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Gallus gallus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.211e-12
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = -3
Query:  258 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNF-----ELIPFGAGRRICPGLPLAIRMLHLMLGSLINSF--DWKLDNHNMDMEDKFGLTVQ 572
            D  I  +++PKGA+V +N+W++  DE  WD P  F P RFL    D +GQ+        +PFGAG R+C G  LA   L L L  ++  F  +   D     +E KFG+ +Q
Sbjct:  381 DTSIGEYSIPKGARVVINLWSVHHDEKEWDKPEEFNPGRFL----DEQGQHIHSPSPSYLPFGAGIRVCLGEVLAKMELFLFLAWVLQRFTLECPQDQPLPSLEGKFGVVLQ 488          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  315 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 572
            D ++ GF +P  +++ VN W +  + + W  P  F PERFL   S+ +  G +F  +PFG GRR CPG+ LA+ +L + +G L+ + +
Sbjct:  383 DPKLNGFDIPAESKILVNAWWLPNNPAHWKKPEEFRPERFLEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNVE 470          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DI_RAT (Cytochrome P450 2D18 OS=Rattus norvegicus GN=Cyp2d18 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = -3
Query:  306 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 584
            K ++D+E+ GF +PKG  + +N+ ++ +DE+ W+ P  F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  380 KTSRDIEVQGFLIPKGTTLIINLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2D6_PANTR (Cytochrome P450 2D6 OS=Pan troglodytes GN=CYP2D6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  306 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 578
            ++D+E+ GF +PKG  +F N+ ++ +D++ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L   SL+  F + +
Sbjct:  379 SRDIEVQGFRIPKGTTLFTNLSSVLKDKAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSV 468          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_MOUSE (Cytochrome P450 1A1 OS=Mus musculus GN=Cyp1a1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = -3
Query:  240 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIP-FGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKAQPLH 578
            T+D  + GF +PKG  VFVN W +  D   W +P+ F PERFL  +     +  E +  FG G+R C G  +    + L L  L+   ++K+     +DM   +GLT++ A+  H
Sbjct:  395 TRDTSLNGFYIPKGCCVFVNQWQVNHDRELWGDPNEFRPERFLTPSGTLDKRLSEKVTLFGLGKRKCIGETIGRSEVFLFLAILLQQIEFKVSPGEKVDMTPTYGLTLKHARCEH 509          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C516A_DICDI (Probable cytochrome P450 516A1 OS=Dictyostelium discoideum GN=cyp516a1 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 36/111 (32.43%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  258 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHN-MDMEDKFGLTVQ 587
            R A++DV    +T+ KG+Q+ +NV+ +  D + W++P TF P R+L S  D     +  IPFG G R+C G  LA   + L +G+++ ++ ++  N   ++ +  FG+ +Q
Sbjct:  368 RIASEDVTCGPYTIEKGSQIIMNVYGLAMDPTVWEDPETFNPYRWLSS--DISQSTYSFIPFGCGSRVCVGSSLARDEIFLGIGNILLNYIFESQNGKPINEKGHFGIALQ 476          
The following BLAST results are available for this feature:
BLAST of CB305039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CP2U1_RAT9.271e-1340.38Cytochrome P450 2U1 OS=Rattus norvegicus GN=Cyp2u1... [more]
CP2DE_BOVIN9.271e-1339.56Cytochrome P450 2D14 OS=Bos taurus GN=CYP2D14 PE=2... [more]
CP17A_PERLE9.271e-1340.66Steroid 17-alpha-hydroxylase/17,20 lyase OS=Peromy... [more]
C5131_DICDI9.271e-1337.38Probable cytochrome P450 513A1 OS=Dictyostelium di... [more]
CP17A_CHICK1.211e-1237.50Steroid 17-alpha-hydroxylase/17,20 lyase OS=Gallus... [more]
TCMO_MEDSA1.581e-1236.36Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
CP2DI_RAT1.581e-1236.56Cytochrome P450 2D18 OS=Rattus norvegicus GN=Cyp2d... [more]
CP2D6_PANTR1.581e-1239.13Cytochrome P450 2D6 OS=Pan troglodytes GN=CYP2D6 P... [more]
CP1A1_MOUSE1.581e-1233.91Cytochrome P450 1A1 OS=Mus musculus GN=Cyp1a1 PE=1... [more]
C516A_DICDI1.581e-1232.43Probable cytochrome P450 516A1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305039 ID=CB305039; Name=CB305039; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTATTAAATNNNATGACT
TTATAGTTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAA
AAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAAC
CACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCT
ACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTT
GAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGG
TTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATG
TAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTC
CGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCT
AAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATC
TCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTG
TGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAG
GGAGCTGCAGGGTGCAATCTCA
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