CB305039

Overview
NameCB305039
Unique NameCB305039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DJ_CALJA (Cytochrome P450 2D19 OS=Callithrix jacchus GN=CYP2D19 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.697e-12
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  306 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 578
            ++D+E+ GF +PKG  +F N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  379 SRDIEVQGFLIPKGTTLFTNLSSVLKDEANWEKPFRFHPEHFLDAQGRFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 468          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DH_MACFA (Cytochrome P450 2D17 OS=Macaca fascicularis GN=CYP2D17 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.697e-12
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  306 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 578
            ++D+E+ GF +PKG  +F N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  379 SRDIELQGFLIPKGTTLFTNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 468          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2D6_HUMAN (Cytochrome P450 2D6 OS=Homo sapiens GN=CYP2D6 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.697e-12
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  306 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 578
            ++D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L   SL+  F + +
Sbjct:  379 SRDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSV 468          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_RAT (Cytochrome P450 1A1 OS=Rattus norvegicus GN=Cyp1a1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.697e-12
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = -3
Query:  240 KDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKAQPLH 575
            +D  + GF +PKG  VFVN W +  D+  W +P+ F PERFL S+    K  + ++I FG G+R C G  +    + L L  L+   ++ +     +DM   +GLT++ A+  H
Sbjct:  396 RDTSLNGFYIPKGHCVFVNQWQVNHDQELWGDPNEFRPERFLTSSGTLDKHLSEKVILFGLGKRKCIGETIGRLEVFLFLAILLQQMEFNVSPGEKVDMTPAYGLTLKHARCEH 509          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2D4_RAT (Cytochrome P450 2D4 OS=Rattus norvegicus GN=Cyp2d4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = -3
Query:  306 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 584
            K ++D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  380 KTSRDIEVQGFLIPKGTTLITNLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2D1_RAT (Cytochrome P450 2D1 OS=Rattus norvegicus GN=Cyp2d1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  306 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 572
            D+E+  F +PKG  + +N+ ++ +DE+ W+ PH F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  384 DIEVQDFVIPKGTTLIINLSSVLKDETVWEKPHRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_SHEEP (Cytochrome P450 1A1 OS=Ovis aries GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = -3
Query:  240 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQPLH 578
            T+D  + GF +PKG  VFVN W I  D+  W++P  F PERFL ++    K  + ++I FG G+R C G  +A   + L L  L++  ++ +     +DM   +GLT++ A+  H
Sbjct:  398 TRDTNLNGFYIPKGXCVFVNQWQINHDQKLWEDPSEFRPERFLTTDGTVNKVLSEKVIIFGLGKRQCIGEIIARLEVFLFLAILLHQVEFHVTPGVKVDMTPLYGLTMKHARCEH 512          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_HUMAN (Cytochrome P450 1A1 OS=Homo sapiens GN=CYP1A1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  252 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKA 578
            T+D  + GF +PKG  VFVN W I  D+  W NP  F+PERFL    A  K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +GLT++ A
Sbjct:  391 TRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVPLGVKVDMTPIYGLTMKHA 501          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_FELCA (Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = -3
Query:  240 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQPLH 578
            TKD  ++GF +PK   VFVN W I  D+  W +P  F PERFL  +    K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +GLT++ A+  H
Sbjct:  396 TKDTSLSGFYIPKERCVFVNQWQINHDQKLWGDPSEFRPERFLTPDGTINKALSEKVILFGLGKRKCIGETIARLEVFLFLAILLQQVEFSVPQGTKVDMTPIYGLTMKHARCEH 510          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DP_PIG (Vitamin D(3) 25-hydroxylase OS=Sus scrofa GN=CYP2D25 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = -3
Query:  306 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 572
            D+E+ GF +PKG  +  N+ ++ +DE+ W  P  F PE FL +   F  Q    +PF AGRR C G PLA   L L   +L+ +F + +
Sbjct:  384 DIEVQGFLIPKGTTLITNLTSVLKDETVWKKPFRFYPEHFLDAQGRFTKQE-AFMPFSAGRRSCLGEPLARMELFLFFTTLLQAFSFSV 471          
The following BLAST results are available for this feature:
BLAST of CB305039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CP2DJ_CALJA2.697e-1239.13Cytochrome P450 2D19 OS=Callithrix jacchus GN=CYP2... [more]
CP2DH_MACFA2.697e-1239.13Cytochrome P450 2D17 OS=Macaca fascicularis GN=CYP... [more]
CP2D6_HUMAN2.697e-1239.13Cytochrome P450 2D6 OS=Homo sapiens GN=CYP2D6 PE=1... [more]
CP1A1_RAT2.697e-1234.21Cytochrome P450 1A1 OS=Rattus norvegicus GN=Cyp1a1... [more]
CP2D4_RAT3.523e-1236.56Cytochrome P450 2D4 OS=Rattus norvegicus GN=Cyp2d4... [more]
CP2D1_RAT3.523e-1237.08Cytochrome P450 2D1 OS=Rattus norvegicus GN=Cyp2d1... [more]
CP1A1_SHEEP3.523e-1235.65Cytochrome P450 1A1 OS=Ovis aries GN=CYP1A1 PE=2 S... [more]
CP1A1_HUMAN3.523e-1237.84Cytochrome P450 1A1 OS=Homo sapiens GN=CYP1A1 PE=1... [more]
CP1A1_FELCA3.523e-1235.65Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 ... [more]
CP2DP_PIG4.601e-1238.20Vitamin D(3) 25-hydroxylase OS=Sus scrofa GN=CYP2D... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305039 ID=CB305039; Name=CB305039; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTATTAAATNNNATGACT
TTATAGTTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAA
AAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAAC
CACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCT
ACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTT
GAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGG
TTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATG
TAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTC
CGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCT
AAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATC
TCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTG
TGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAG
GGAGCTGCAGGGTGCAATCTCA
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