CB305039

Overview
NameCB305039
Unique NameCB305039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_ORYLA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oryzias latipes GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = -3
Query:  258 ATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL---GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNM--DMEDKFGLTVQ 581
            A  D  +  FTV KG +V +N+W++  DE  W NP  F P RFL   GS+      ++  +PFGAG R+C G  LA   L L L  ++  F   +        +E KFG+ +Q
Sbjct:  384 ALSDTSLGDFTVRKGTRVVINLWSLHHDEKEWTNPDLFNPGRFLSADGSSLTLPSSSY--LPFGAGLRVCLGEALAKMELFLFLSWILQRFTLSVPPSQSLPSLEGKFGVVLQ 494          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_MESAU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Mesocricetus auratus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = -3
Query:  315 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 584
            +A  D+ I  F++PK   V +N+WA+   E  WD P  F+PERFL  + +     +   +PFGAG R C G  LA + L L +  L+  FD
Sbjct:  374 RANSDMSIGEFSIPKFTPVIINLWALHHSEKEWDQPDRFMPERFLDPTGSHLITPSLSYLPFGAGARSCIGEVLARQELFLFMAHLLQRFD 464          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_ICTPU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalurus punctatus GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 48/144 (33.33%), Postives = 67/144 (46.53%), Query Frame = -3
Query:  153 ATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMEDKFGLTVQKAQPLHAVPGAI*FYTIVRSQYIKRLVVATI*SAW 581
            A  D  I  +TV KG +V VN+W++  DE  W NP  F PERFL    +     +   +PFGAG R+C G  LA   L L L  ++                +F L V   QPL  + G   F  +++ Q  K  V+A + + W
Sbjct:  378 ALSDANIGEYTVQKGTRVIVNLWSLHHDEKEWKNPELFNPERFLNEEGNSLCCPSLSYLPFGAGVRVCLGEALAKLELFLFLSWIL---------------QRFTLEVPGGQPLPELQGK--FRVVLQPQKYK--VIARLRTGW 502          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP4P3_DROME (Probable cytochrome P450 4p3 OS=Drosophila melanogaster GN=Cyp4p3 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 38/117 (32.48%), Postives = 67/117 (57.26%), Query Frame = -3
Query:  240 RKATKDVEIA-GFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMEDKFGLTVQKAQPLH 587
            R+ T++ E++ G  +PKG+Q+FV+V+ I R+   WD+P  F PERFL  N+  +   +  IPF AG+R C G   A++ +  ++ +L+  F    +     +  + GLT++    +H
Sbjct:  393 RETTRETELSNGLILPKGSQIFVHVFDIHRNPEYWDSPEEFRPERFLPENSQNR-HTYAYIPFSAGQRNCIGQKFAMQEMKTLMVALLKQFQILPEIDPKTIVFQTGLTLRTKNQIH 508          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2R1_MOUSE (Vitamin D 25-hydroxylase OS=Mus musculus GN=Cyp2r1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = -3
Query:  258 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNM-DMEDKFGLTVQ 578
            ++D  + G+++PKG  V  N++++  DE  W +P  F PERFL SN  F  +   LIPF  GRR C G  LA   + L   SL+  F     +  + +++ + G+T+Q
Sbjct:  384 SEDAVVRGYSIPKGTTVITNLYSVHFDEKYWKDPDMFYPERFLDSNGYFTKKE-ALIPFSLGRRHCLGEQLARMEMFLFFTSLLQQFHLHFPHELVPNLKPRLGMTLQ 490          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2J3_RAT (Cytochrome P450 2J3 OS=Rattus norvegicus GN=Cyp2j3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 42/121 (34.71%), Postives = 62/121 (51.24%), Query Frame = -3
Query:  231 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQK-AQPLHAVP 587
            R+   D  +AGF +PKG  +  N+ A+ RD   W  P TF PE FL  N  FK +    +PF  G+R C G  LA   L + + SLI  F +K   N  + ++ +  +T+   +  L A+P
Sbjct:  382 REVAVDTYLAGFNLPKGTMILTNLTALHRDPKEWATPDTFNPEHFL-ENGQFKKRE-SFLPFSMGKRACLGEQLARSELFIFITSLIQKFTFKPPVNEKLSLQFRMSVTISPVSHRLCAIP 500          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2D3_RAT (Cytochrome P450 2D3 OS=Rattus norvegicus GN=Cyp2d3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = -3
Query:  306 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 584
            K ++D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  380 KTSRDIEVQGFLIPKGTTLIPNLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_MACMU (Cytochrome P450 1A1 OS=Macaca mulatta GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  252 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKA 578
            T+D  + GF +PKG  VFVN W I  D+  W NP  F+PERF+    A  K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +GLT++ A
Sbjct:  391 TRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFITPDGAIDKVLSEKVILFGLGKRKCIGETIARWEVFLFLAILLQRVEFSVPPGVKVDMTPIYGLTMKHA 501          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_MACFA (Cytochrome P450 1A1 OS=Macaca fascicularis GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  252 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKA 578
            T+D  + GF +PKG  VFVN W I  D+  W NP  F+PERF+    A  K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +GLT++ A
Sbjct:  391 TRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFITPDGAIDKVLSEKVILFGLGKRKCIGETIARWEVFLFLAILLQRVEFSVPPGVKVDMTPIYGLTMKHA 501          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_PANTR (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Pan troglodytes GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 40/103 (38.83%), Postives = 52/103 (50.49%), Query Frame = -3
Query:  315 RLHXXXXXXXPRKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 620
            RL        P KA  D  I  F V KG QV +N+WA+  +E  W  P  F+PERFL  +       +   +PFGAG R C G  LA + L L++  L+  FD
Sbjct:  362 RLRPVAPMLIPHKANVDSSIGEFAVDKGTQVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFD 464          
The following BLAST results are available for this feature:
BLAST of CB305039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CP17A_ORYLA4.601e-1236.28Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oryzia... [more]
CP17A_MESAU4.601e-1238.46Steroid 17-alpha-hydroxylase/17,20 lyase OS=Mesocr... [more]
CP17A_ICTPU4.601e-1233.33Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalu... [more]
CP4P3_DROME6.009e-1232.48Probable cytochrome P450 4p3 OS=Drosophila melanog... [more]
CP2R1_MOUSE6.009e-1235.19Vitamin D 25-hydroxylase OS=Mus musculus GN=Cyp2r1... [more]
CP2J3_RAT6.009e-1234.71Cytochrome P450 2J3 OS=Rattus norvegicus GN=Cyp2j3... [more]
CP2D3_RAT6.009e-1236.56Cytochrome P450 2D3 OS=Rattus norvegicus GN=Cyp2d3... [more]
CP1A1_MACMU6.009e-1236.94Cytochrome P450 1A1 OS=Macaca mulatta GN=CYP1A1 PE... [more]
CP1A1_MACFA6.009e-1236.94Cytochrome P450 1A1 OS=Macaca fascicularis GN=CYP1... [more]
CP17A_PANTR6.009e-1238.83Steroid 17-alpha-hydroxylase/17,20 lyase OS=Pan tr... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305039 ID=CB305039; Name=CB305039; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTATTAAATNNNATGACT
TTATAGTTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAA
AAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAAC
CACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCT
ACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTT
GAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGG
TTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATG
TAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTC
CGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCT
AAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATC
TCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTG
TGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAG
GGAGCTGCAGGGTGCAATCTCA
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