CB305039

Overview
NameCB305039
Unique NameCB305039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2J2_HUMAN (Cytochrome P450 2J2 OS=Homo sapiens GN=CYP2J2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = -3
Query:  231 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK-LDNHNMDMEDKFGLTVQK-AQPLHAVP 587
            R+ T D  +AG+ +PKG  +  N+ A+ RD + W  P TF P+ FL  N  FK +    +PF  G+R C G  LA   L +   SL+  F ++  +N  + ++ + G+T+   +  L AVP
Sbjct:  382 REVTVDTTLAGYHLPKGTMILTNLTALHRDPTEWATPDTFNPDHFL-ENGQFKKRE-AFMPFSIGKRACLGEQLARTELFIFFTSLMQKFTFRPPNNEKLSLKFRMGITISPVSHRLCAVP 500          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_MOUSE (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Mus musculus GN=Cyp17a1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = -3
Query:  300 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL---GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDN 584
            KA  D  I  F +PK   V +N+WA+  D++ WD P  F+PERFL   GS+      ++  +PFGAG R C G  LA + L + +  L+  FD+ + +
Sbjct:  373 KANIDSSIGEFAIPKDTHVIINLWALHHDKNEWDQPDRFMPERFLDPTGSHLITPTPSY--LPFGAGPRSCIGEALARQELFIFMALLLQRFDFDVSD 468          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_RABIT (Cytochrome P450 1A1 OS=Oryctolagus cuniculus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = -3
Query:  240 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKAQPLH 578
            T+D  + GF +PKG  VFVN W    D   W +P  F PERFL  S A  K    +++ FG G+R C G  +    + L L +L+   ++ +     +DM   +GLT++ A+  H
Sbjct:  395 TRDTSLGGFYIPKGRCVFVNQWQNNHDPELWGDPEAFRPERFLTPSGAVDKALTEKVLLFGLGKRKCIGETIGRLEVFLFLATLLQQVEFSVSPGTTVDMTPIYGLTMKHARCEH 509          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_HUMAN (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 39/103 (37.86%), Postives = 52/103 (50.49%), Query Frame = -3
Query:  315 RLHXXXXXXXPRKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 620
            RL        P KA  D  I  F V KG +V +N+WA+  +E  W  P  F+PERFL  +       +   +PFGAG R C G  LA + L L++  L+  FD
Sbjct:  362 RLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFD 464          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP3AC_CANFA (Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = -3
Query:  309 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK 587
            R   KDVEI+G  +PKG  V V  + + RD+S W  P  F PERF   N D     +  +PFG G R C G+  AI  + L L  ++ +F +K
Sbjct:  375 RVCKKDVEISGVFIPKGTVVMVPTFTLHRDQSLWPEPEEFRPERFSRKNKD-SINPYTYLPFGTGPRNCIGMRFAIMNMKLALVRVLQNFSFK 466          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DS_MESAU (Cytochrome P450 2D28 OS=Mesocricetus auratus GN=CYP2D28A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  306 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 578
            ++D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +   F  Q    +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  382 SRDIEVQGFLIPKGTTLITNLSSVLKDETVWEKPLHFHPEHFLDAQGCFVKQE-AFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DK_MESAU (Cytochrome P450 2D20 OS=Mesocricetus auratus GN=CYP2D20 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  306 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 578
            ++DVE+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +   F  Q    +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  382 SRDVEVQGFLIPKGTTLIPNLSSVLKDETVWEKPLHFHPEHFLDAQGRFVKQE-AFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DF_CANFA (Cytochrome P450 2D15 OS=Canis familiaris GN=CYP2D15 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = -3
Query:  306 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 578
            ++D E+ GF +PKG  +  N+ ++ +DE  W  P  F PE FL +   F  ++   +PF AGRR+C G PLA   L L    L+  F + +
Sbjct:  382 SRDTEVQGFLIPKGTTLITNLSSVLKDEKVWKKPFRFYPEHFLDAQGHFV-KHEAFMPFSAGRRVCLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_MESAU (Cytochrome P450 1A1 OS=Mesocricetus auratus GN=CYP1A1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 38/112 (33.93%), Postives = 61/112 (54.46%), Query Frame = -3
Query:  249 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKAQ 578
            T+D  + GF +PKG  VFVN W I  ++  W +P+ F PERFL S+    K  + ++  FG G+R C G  +    + L L  L+   ++ +     +DM   +GLT++ A+
Sbjct:  395 TRDTSLCGFYIPKGHCVFVNQWQINHNQELWGDPNKFRPERFLTSSGTLDKVLSGKVTLFGLGKRKCIGETIGRLEVFLFLAILLQQIEFTVSPGEKVDMTPIYGLTLKHAR 506          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_PAPHU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Papio hamadryas ursinus GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = -3
Query:  315 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 584
            KA  D  I  F V KG  V +N+WA+  +E  W  P  F+PERFL  +       +   +PFGAG R C G  LA + L L++  L+  FD
Sbjct:  374 KANVDSSIGEFAVDKGTHVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSLSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFD 464          
The following BLAST results are available for this feature:
BLAST of CB305039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CP2J2_HUMAN1.025e-1133.88Cytochrome P450 2J2 OS=Homo sapiens GN=CYP2J2 PE=1... [more]
CP17A_MOUSE1.025e-1137.76Steroid 17-alpha-hydroxylase/17,20 lyase OS=Mus mu... [more]
CP1A1_RABIT1.339e-1134.78Cytochrome P450 1A1 OS=Oryctolagus cuniculus GN=CY... [more]
CP17A_HUMAN1.339e-1137.86Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo s... [more]
CP3AC_CANFA1.748e-1139.78Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A1... [more]
CP2DS_MESAU1.748e-1137.36Cytochrome P450 2D28 OS=Mesocricetus auratus GN=CY... [more]
CP2DK_MESAU1.748e-1138.46Cytochrome P450 2D20 OS=Mesocricetus auratus GN=CY... [more]
CP2DF_CANFA1.748e-1136.26Cytochrome P450 2D15 OS=Canis familiaris GN=CYP2D1... [more]
CP1A1_MESAU2.284e-1133.93Cytochrome P450 1A1 OS=Mesocricetus auratus GN=CYP... [more]
CP17A_PAPHU2.284e-1139.56Steroid 17-alpha-hydroxylase/17,20 lyase OS=Papio ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305039 ID=CB305039; Name=CB305039; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTATTAAATNNNATGACT
TTATAGTTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAA
AAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAAC
CACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCT
ACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTT
GAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGG
TTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATG
TAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTC
CGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCT
AAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATC
TCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTG
TGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAG
GGAGCTGCAGGGTGCAATCTCA
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